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authorJustin Lecher <jlec@gentoo.org>2015-03-29 16:03:48 +0000
committerJustin Lecher <jlec@gentoo.org>2015-03-29 16:03:48 +0000
commiteb773322ec975bfe7fbddece1d8336210598b130 (patch)
tree28b806e4cf43bd01ee4bfec9d832adef82346f8c /sci-biology
parentStreamline ebuild layout (diff)
downloadhistorical-eb773322ec975bfe7fbddece1d8336210598b130.tar.gz
historical-eb773322ec975bfe7fbddece1d8336210598b130.tar.bz2
historical-eb773322ec975bfe7fbddece1d8336210598b130.zip
Use REQUIRED_USE to constrain sse3 compatibility
Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/raxml/ChangeLog5
-rw-r--r--sci-biology/raxml/Manifest40
-rw-r--r--sci-biology/raxml/raxml-7.2.6.ebuild12
3 files changed, 29 insertions, 28 deletions
diff --git a/sci-biology/raxml/ChangeLog b/sci-biology/raxml/ChangeLog
index 3adbd6fe1357..37c3811e4f18 100644
--- a/sci-biology/raxml/ChangeLog
+++ b/sci-biology/raxml/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/raxml
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.10 2015/01/29 21:23:13 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.11 2015/03/29 16:03:43 jlec Exp $
+
+ 29 Mar 2015; Justin Lecher <jlec@gentoo.org> raxml-7.2.6.ebuild:
+ Use REQUIRED_USE to constrain sse3 compatibility
29 Jan 2015; Michał Górny <mgorny@gentoo.org> metadata.xml,
raxml-7.2.6.ebuild:
diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest
index 393b4f726494..016e4bb815f4 100644
--- a/sci-biology/raxml/Manifest
+++ b/sci-biology/raxml/Manifest
@@ -1,28 +1,28 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
AUX raxml-7.2.5-makefile.patch 1420 SHA256 f3c9d9eaacf7a7e0d1594e3d689f938ff82c2dbdb4c4c4f2ed81a861ebd7adb5 SHA512 f905bfb638396c81ccd5f66deaf39c574bb9d97a94ff78b786214390f2ac715b7d4e251ba5d13701805f3928f450b6affefce565e7c30544d32e33ed6e5f20ca WHIRLPOOL d26222d935a8462cf10b6244ed043f1437038039c24486993c022332a7148bdd759704a9698242a1bbd60053afde0061edc31684c022085eb0e041e38818c42f
AUX raxml-7.2.6-makefile.patch 777 SHA256 0e87b5cd6375669e660ef6e3c37e51e751ea8846de6c52060f484380c28610d5 SHA512 0cc326e8fed0882c56193fef9d1c98577f2252acc4dc25e650e0806d89ded0e2911e6967272a6d101cf830cfe63a190a8f5220fd7573864f5fa60106069ad74f WHIRLPOOL 896bb8f27d458e1d555ffb462abf89f55c487e595a604b3446c579a2e95719cfdfb1911873ca2570a73c3299ef49f0c489ee0c127fcb6e1acdcf907c748459b0
-DIST RAxML-7.2.6.tar.bz2 202803 SHA256 d45bcbe45e3ed5f8d6ba3c99b9da9b202c72a9fb196a9d32d2961ee4cb791868
-EBUILD raxml-7.2.6.ebuild 1148 SHA256 050c95bdbe3c44d67e2f8c7f0ee2e1f494a929a0ab60362f83e5b3795354c658 SHA512 d7a4ee0de7613b52be93ad0d3f00bcb34f42c95bd8e8147cdfe9bea3b7495c5a0f4985bc09136f2b2a9c0ebeb32ecb3b68e3488fe157ba169d4a316198e2a25a WHIRLPOOL cee4b3a75cd89f2f950201f3d5bda20b091529b5969da905eec882eb7f786d9d6c93bc90a54b798498a30471bf40563275023d18df3f0da6ac37c126cd5e45e7
-MISC ChangeLog 1726 SHA256 13b6ddaba0ea1291a0112f04757aabb0c22edb9c89f9a4dfaf5b57884aaf0a09 SHA512 6d39e961477e5bdce29f7ff0b76ea1130e8f4afa06853f30713d5c88dcf72a2bb9f2351b98cac6f2f1dc7c87ac5e35182ab77cca46f46ac428e1a94e7e50a9a2 WHIRLPOOL 58022cd1fbae658bdc3f722c138e497d27e0fcf52ee0dea3c1e9ee5e795a0f79c54e3ae240a48cf0f39132440c36a3ecbf3b27388bd411a02687d1e0883723a7
+DIST RAxML-7.2.6.tar.bz2 202803 SHA256 d45bcbe45e3ed5f8d6ba3c99b9da9b202c72a9fb196a9d32d2961ee4cb791868 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3 WHIRLPOOL 7fe7ac66412c979d3ecca17e2c06a32566fefe7bdcf39664a0885fcdebc2b8187c222ca5e29cf2685085fba21a8aff0a2aefceec08823cab155a5f62f8b59490
+EBUILD raxml-7.2.6.ebuild 1071 SHA256 67e759359cde54ad06f2bd6c0a5f35b0c0f2e725600d8cb85624e5c985647779 SHA512 0e1c4da2a20d6e2517e7192198ec5f92e1c306b7dc7d3e764a024c3e143f1cafc0e644b23e856a7716977a695068b9f1a9aa681f1101594b27730d98d5a984af WHIRLPOOL eee33988f1e2999e6a77c0318e2635cd604cdce347a47380e5d5dfc4cfb3f596c5ce703a08dc5772e48dc76d7db04705f9a001844387ebcfa52910bda5e004c7
+MISC ChangeLog 1843 SHA256 2ec70b5d4538f389badbaafbbf6e5559164c6be15ced5f0214f9456f45f0517f SHA512 6c6e4e9d5c44f60a2ec10944268b2659f722a215acc63a1cc4875ec4f0d49e127a5054f6dc10a8382a800c43d2ebc6e3d930e3793620bd055ae049d722869984 WHIRLPOOL 30a5a7128142db85ba9afbfaa6c9054ed26157f197acfe63236e43e3a87a7a245a629581923a66c699c533746503519c25cda00c82a903f1e1960582912b8121
MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
-----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
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diff --git a/sci-biology/raxml/raxml-7.2.6.ebuild b/sci-biology/raxml/raxml-7.2.6.ebuild
index c8e23c50ca8b..a68b146fa87f 100644
--- a/sci-biology/raxml/raxml-7.2.6.ebuild
+++ b/sci-biology/raxml/raxml-7.2.6.ebuild
@@ -1,12 +1,12 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v 1.3 2015/01/29 21:23:13 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v 1.4 2015/03/29 16:03:43 jlec Exp $
-EAPI=4
+EAPI=5
inherit eutils flag-o-matic toolchain-funcs
-DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
+DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"
@@ -15,16 +15,14 @@ LICENSE="GPL-2"
KEYWORDS="~amd64 ~x86"
IUSE="cpu_flags_x86_sse3 +threads"
+REQUIRED_USE="cpu_flags_x86_sse3"
+
# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
DEPEND="" # mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"
S="${WORKDIR}/RAxML-${PV}"
-pkg_pretend() {
- use cpu_flags_x86_sse3 || die "This package needs sse3 support in your CPU"
-}
-
src_prepare() {
epatch "${FILESDIR}"/${P}-makefile.patch