Version bump (see bug #209007).

Package-Manager: portage-2.1.4.1

5 files changed, 90 insertions, 14 deletions

diff --git a/sci-chemistry/pdb2pqr/ChangeLog b/sci-chemistry/pdb2pqr/ChangeLog
index 0bbe7955cf55..9e0e2b29e758 100644
--- a/sci-chemistry/pdb2pqr/ChangeLog
+++ b/sci-chemistry/pdb2pqr/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/pdb2pqr
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.10 2007/04/03 15:54:17 je_fro Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.11 2008/02/06 15:14:10 markusle Exp $
+
+*pdb2pqr-1.3.0 (06 Feb 2008)
+
+  06 Feb 2008; Markus Dittrich <markusle@gentoo.org> +pdb2pqr-1.3.0.ebuild:
+  Version bump (see bug #209007).
 
 *pdb2pqr-1.2.1 (03 Apr 2007)
 
diff --git a/sci-chemistry/pdb2pqr/Manifest b/sci-chemistry/pdb2pqr/Manifest
index 92e58e904772..cda314b7403b 100644
--- a/sci-chemistry/pdb2pqr/Manifest
+++ b/sci-chemistry/pdb2pqr/Manifest
@@ -4,7 +4,9 @@ AUX pdb2pqr-gcc4-gentoo.patch 627 RMD160 293cd6faa4c9d9a20ca8a708187652c79f10692
 AUX pdb2pqr-propka-gentoo.patch 383 RMD160 aba20c68558d3131b9f04b4188c70e42611f013e SHA1 4bfd930bdfd719d22d8f8576949eb68dd35e0036 SHA256 5f75dfd2a72861b46685568ea6c55be0ed055ab5d72d231e328f7f482252101a
 DIST pdb2pqr-1.1.2.tar.gz 653600 RMD160 40510384a6b03213d6c857a270d508d4bbefa884 SHA1 89ae9b50e64fc3bbd2a868af01da708fb3f45395 SHA256 ea45ec40b420044e5c7a11744a5db867c544b93d25a8bccf27ebac43cd7d6f94
 DIST pdb2pqr-1.2.1.tar.gz 2090993 RMD160 647aa616703208f81396917b805be1daf3adf180 SHA1 8ff7423fe42dbd86db62227c8d729dfc9a3ee7dd SHA256 d05d6ae084c689f3873b8ab68fb7285863d57125ecbe8def14de879430d753d7
-EBUILD pdb2pqr-1.1.2.ebuild 1876 RMD160 c0248512af4dbddf1513a2da03e560f7bdfad840 SHA1 3454b334039119af96be9eaf82fb46bd96226cde SHA256 848b1cd6948680fa219ab45c4d16c173b58524a0444fb002780fc87c9a5a6513
-EBUILD pdb2pqr-1.2.1.ebuild 1743 RMD160 397d7c121fa55a01a05bcb6e53b09ddc038ef744 SHA1 1c152befb85aa44fc49c56ee511de07dd43bc8ba SHA256 88eb0de1f9f46526471fde101b1bb6f33cb119f4e11c571e453649196072d4fc
-MISC ChangeLog 1605 RMD160 1ee48b550e20354888ec2d7a7d098836629eaa64 SHA1 724fef7075025526004e23774a93c861ed4a29c2 SHA256 9f23ff6d9a1f0f6ff43190594f7bf90eab01471aa2acda0fc6c3c98e3dcd8a3a
+DIST pdb2pqr-1.3.0.tar.gz 2641989 RMD160 469b38457a10e93ce96c7ea4e580cb4656ba3218 SHA1 e2095a7130ff6114d15466b009cc8ed335d8ffd1 SHA256 7e8a733aacdb76ec8f920b6827ebbc86712044a10c50363535978bc22b7fd413
+EBUILD pdb2pqr-1.1.2.ebuild 1848 RMD160 e56dd0be66205cee302fc5c2a8c0caca8adb17ab SHA1 07cc0856bfb50c1648ba4dd1b6c2cb9103943d6d SHA256 995a2a2940b97a7daf18c8a487f5381c2019285b57fe03982969d6406974f1a2
+EBUILD pdb2pqr-1.2.1.ebuild 1717 RMD160 a47593b7d6a5a206ed34544719ccc603f9cf5196 SHA1 db42c2869b3bb57f68a51a8efed5871db71a9079 SHA256 8c97db05b9e2bb337d4d8f19eb74119b1bf0edf9882089493ccefd2727ac4c7a
+EBUILD pdb2pqr-1.3.0.ebuild 1822 RMD160 19c8f34d483d90fcc277dc561a2a470f571a2958 SHA1 3a5bfd569b74bac48568284da67262848f0ef515 SHA256 130cdb2a05250d6e515966e70224e844184eec2af46870d4040bc2e30b44fb95
+MISC ChangeLog 1748 RMD160 39de74828142c7f80935eeac0ee50bcf0ae9ac03 SHA1 665ad679317d74ff627fe6eeeff53bf5c3f9bab4 SHA256 ce32a255a4bfba526102b6891edfbd0e20e16198e53aba9dc26db3549b020c2f
 MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
index c8c5d1e9cf61..c5b3c57cf836 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v 1.7 2007/07/13 05:48:10 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v 1.8 2008/02/06 15:14:10 markusle Exp $
 
 inherit eutils fortran multilib flag-o-matic distutils
 
-DESCRIPTION="pdb2pqr is an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations"
+DESCRIPTION="pdb2pqr is an automated pipeline for performing Poisson-Boltzmann electrostatics calculations"
 LICENSE="GPL-2"
 HOMEPAGE="http://pdb2pqr.sourceforge.net/"
 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
@@ -18,7 +18,7 @@ DEPEND="dev-lang/python"
 FORTRAN="g77 gfortran"
 
 src_unpack() {
-	unpack "${A}"
+	unpack ${A}
 	cd "${S}"
 
 	epatch "${FILESDIR}"/${P}-gcc4-gentoo.patch
@@ -66,7 +66,7 @@ ${python} ${INPATH}/${PN}.py \$*
 EOF
 
 	exeinto /usr/bin
-	doexe ${T}/${PN} || die "Failed to install pdb2pqr wrapper."
+	doexe "${T}"/${PN} || die "Failed to install pdb2pqr wrapper."
 
 	dodoc ChangeLog NEWS README AUTHORS || \
 		die "Failed to install docs"
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
index 94794e5604bf..fade32bc1c9a 100644
--- a/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v 1.4 2008/02/06 15:14:10 markusle Exp $
 
 inherit eutils fortran multilib flag-o-matic distutils
 
-DESCRIPTION="pdb2pqr is an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations"
+DESCRIPTION="pdb2pqr is an automated pipeline for performing Poisson-Boltzmann electrostatics calculations"
 LICENSE="GPL-2"
 HOMEPAGE="http://pdb2pqr.sourceforge.net/"
 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
@@ -58,7 +58,7 @@ ${python} ${INPATH}/${PN}.py \$*
 EOF
 
 	exeinto /usr/bin
-	doexe ${T}/${PN} || die "Failed to install pdb2pqr wrapper."
+	doexe "${T}"/${PN} || die "Failed to install pdb2pqr wrapper."
 
 	dodoc ChangeLog NEWS README AUTHORS || \
 		die "Failed to install docs"
diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild
new file mode 100644
index 000000000000..acc332c03593
--- /dev/null
+++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild,v 1.1 2008/02/06 15:14:10 markusle Exp $
+
+inherit eutils fortran multilib flag-o-matic distutils
+
+DESCRIPTION="pdb2pqr is an automated pipeline for performing Poisson-Boltzmann electrostatics calculations"
+LICENSE="BSD"
+HOMEPAGE="http://pdb2pqr.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dev-lang/python"
+
+FORTRAN="g77 gfortran"
+
+src_compile() {
+	# we need to compile the *.so as pic
+	append-flags -fPIC
+	FFLAGS="${FFLAGS} -fPIC"
+	F77="${FORTRANC}" econf || die "econf failed"
+	emake || die "emake failed"
+}
+
+src_install() {
+	python_version
+	INPATH="/usr/$(get_libdir)/python${PYVER}/site-packages/${PN}"
+
+	insinto "${INPATH}"
+	doins __init__.py || \
+		die "Setting up the pdb2pqr site-package failed."
+
+	exeinto "${INPATH}"
+	doexe ${PN}.py || die "Installing pdb2pqr failed."
+
+	exeinto "${INPATH}"/propka
+	doexe propka/_propkalib.so || \
+		die "Failed to install propka."
+
+	exeinto "${INPATH}"/extensions
+	doexe extensions/* || \
+		die "Failed to install extensions."
+
+	insinto "${INPATH}"/propka
+	doins propka/propkalib.py propka/__init__.py || \
+		die "Failed to install propka."
+
+	insinto "${INPATH}"/src
+	doins src/* || die "Installing of python scripts failed."
+
+	insinto "${INPATH}"/dat
+	doins dat/* || die "Installing data failed."
+
+	# generate pdb2pqr wrapper
+	cat >> "${T}"/${PN} <<-EOF
+		#!/bin/sh
+		${python} ${INPATH}/${PN}.py \$*
+	EOF
+
+	exeinto /usr/bin
+	doexe "${T}"/${PN} || die "Failed to install pdb2pqr wrapper."
+
+	dodoc ChangeLog NEWS README AUTHORS || \
+		die "Failed to install docs"
+	dohtml -r doc/* || die "Failed to install html docs."
+}