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authorJeffrey Gardner <je_fro@gentoo.org>2007-07-04 23:56:14 +0000
committerJeffrey Gardner <je_fro@gentoo.org>2007-07-04 23:56:14 +0000
commita8838e0f1c2ef604af62e630723857fa20596ff5 (patch)
treea99b39e430203c7df68e3c85751a99d539f0203b /sci-chemistry/pymol
parentremoved src_install() and src_compile(); relocated IUSE; added a pair of quotes (diff)
downloadhistorical-a8838e0f1c2ef604af62e630723857fa20596ff5.tar.gz
historical-a8838e0f1c2ef604af62e630723857fa20596ff5.tar.bz2
historical-a8838e0f1c2ef604af62e630723857fa20596ff5.zip
Removing obsolete ebuild/files.
Package-Manager: portage-2.1.2.9
Diffstat (limited to 'sci-chemistry/pymol')
-rw-r--r--sci-chemistry/pymol/ChangeLog6
-rw-r--r--sci-chemistry/pymol/Manifest30
-rw-r--r--sci-chemistry/pymol/files/digest-pymol-0.99_rc6-r23
-rw-r--r--sci-chemistry/pymol/files/pymol-0.99_rc6-data-path.patch57
-rw-r--r--sci-chemistry/pymol/pymol-0.99_rc6-r2.ebuild86
5 files changed, 9 insertions, 173 deletions
diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog
index 909fd9b5ef14..38e802549967 100644
--- a/sci-chemistry/pymol/ChangeLog
+++ b/sci-chemistry/pymol/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-chemistry/pymol
# Copyright 2002-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.32 2007/07/04 18:00:01 angelos Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.33 2007/07/04 23:56:14 je_fro Exp $
+
+ 04 Jul 2007; Jeff Gardner <je_fro@gentoo.org>
+ -files/pymol-0.99_rc6-data-path.patch, -pymol-0.99_rc6-r2.ebuild:
+ Removing unneeded files.
04 Jul 2007; Christoph Mende <angelos@gentoo.org> pymol-0.99_rc10.ebuild:
Stable on amd64 wrt bug #183879
diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest
index 2d41c8ed61e3..92d47d641ce5 100644
--- a/sci-chemistry/pymol/Manifest
+++ b/sci-chemistry/pymol/Manifest
@@ -1,6 +1,3 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
AUX nosplash-gentoo.patch 332 RMD160 2280fbe9daba8a0d3ca81a3aacfcc55bd06fc7d3 SHA1 275a325f7a9bb076bea72897fd6dd5ed1b014390 SHA256 5e0761591eeea90bcaa06a72c210a80ba46f2542ff985f8dd893af112254a890
MD5 929741dc2da6577e6e99c5542d68dbd5 files/nosplash-gentoo.patch 332
RMD160 2280fbe9daba8a0d3ca81a3aacfcc55bd06fc7d3 files/nosplash-gentoo.patch 332
@@ -9,31 +6,22 @@ AUX pymol-0.99_rc10-data-path.patch 2969 RMD160 608e0e936fccf0860f6b5269e6739c83
MD5 ef6d1169828c5bfdab08ddd59bb6dcf6 files/pymol-0.99_rc10-data-path.patch 2969
RMD160 608e0e936fccf0860f6b5269e6739c839fcd32ea files/pymol-0.99_rc10-data-path.patch 2969
SHA256 10c97c3d4d2f620a2884a812a6997f2cf8472f2e0c589c2630a4d0bcf67656de files/pymol-0.99_rc10-data-path.patch 2969
-AUX pymol-0.99_rc6-data-path.patch 2473 RMD160 76847259270179d6b4196d816da777efb9f83698 SHA1 ec41297decfa365363d86f073c3dd04778bece1e SHA256 93714e86fc9ce8137b5ff06b4f1e5897740de1ed80d577f6874d95ea65cc142d
-MD5 035c32a87c619d2c2cf6c0d7466d92e0 files/pymol-0.99_rc6-data-path.patch 2473
-RMD160 76847259270179d6b4196d816da777efb9f83698 files/pymol-0.99_rc6-data-path.patch 2473
-SHA256 93714e86fc9ce8137b5ff06b4f1e5897740de1ed80d577f6874d95ea65cc142d files/pymol-0.99_rc6-data-path.patch 2473
AUX pymol-1.0-r1-data-path.patch 3521 RMD160 bbd8722a1f52944f122caa64642db5dc2609a208 SHA1 735871b06d8f874334ef51fe9054ae92a7fbe523 SHA256 ba0c036b1f01338b42f9e31a0252be59292726289e330f4c33cf52ee48ea9172
MD5 a4374b31425bacedced00a40affff235 files/pymol-1.0-r1-data-path.patch 3521
RMD160 bbd8722a1f52944f122caa64642db5dc2609a208 files/pymol-1.0-r1-data-path.patch 3521
SHA256 ba0c036b1f01338b42f9e31a0252be59292726289e330f4c33cf52ee48ea9172 files/pymol-1.0-r1-data-path.patch 3521
-DIST pymol-0_99rc6-src.tgz 4198816 RMD160 e9dc568dd38fffd37f306adf7e7a109d81dd4477 SHA1 dec1dabdf8cd57b1328b24b985b52c88b484ee4b SHA256 d56bebc1316fd3442c54dee5bc4b2979041943bf50a9b34b44839595fd1b9a59
EBUILD pymol-0.99_rc10.ebuild 2132 RMD160 1285ffb7f4e8dbaed74aea489238724bc88bef81 SHA1 1654b8f518d3f85385f41b14c385a1a39a361bd9 SHA256 7654370378dacb5b957f318a0f9df43827ab8cb0f9f3dc37268cd9e46ec25633
MD5 b6411fb5ffb9d44097d69ab48022d913 pymol-0.99_rc10.ebuild 2132
RMD160 1285ffb7f4e8dbaed74aea489238724bc88bef81 pymol-0.99_rc10.ebuild 2132
SHA256 7654370378dacb5b957f318a0f9df43827ab8cb0f9f3dc37268cd9e46ec25633 pymol-0.99_rc10.ebuild 2132
-EBUILD pymol-0.99_rc6-r2.ebuild 2249 RMD160 e9880c17c713ea7a662d66f413826867e0488a9d SHA1 1f8b294c2207233f3f8cbb02e64589e16e77fd97 SHA256 f1e5aad775ff6eda2898fdf0fce73f0ce42a7bb4259696a2a3468f4b94e49a15
-MD5 d6952c3d9892e84d4a115697e97cac7f pymol-0.99_rc6-r2.ebuild 2249
-RMD160 e9880c17c713ea7a662d66f413826867e0488a9d pymol-0.99_rc6-r2.ebuild 2249
-SHA256 f1e5aad775ff6eda2898fdf0fce73f0ce42a7bb4259696a2a3468f4b94e49a15 pymol-0.99_rc6-r2.ebuild 2249
EBUILD pymol-1.0-r1.ebuild 2117 RMD160 2dcfeb2e4c2f2b3c305659407139f9b2027922c9 SHA1 a8aab337f1245eb2174400f3f03cdd3df20a6225 SHA256 6955b2f830acd8047b78fea795466bdcff95264869a717ee3353284946ffb441
MD5 c1b7327301e444a95d336e727ddce5ea pymol-1.0-r1.ebuild 2117
RMD160 2dcfeb2e4c2f2b3c305659407139f9b2027922c9 pymol-1.0-r1.ebuild 2117
SHA256 6955b2f830acd8047b78fea795466bdcff95264869a717ee3353284946ffb441 pymol-1.0-r1.ebuild 2117
-MISC ChangeLog 7800 RMD160 8b3fd8e25185891f44cb7db6e4030eef23910cd6 SHA1 ac99c79c7a31a7fdb8f2eae00d88f836d8424c16 SHA256 66881b2bd091ae73433a02b99c755caf2406bcff66446fdde3f82a3cf02324bc
-MD5 41235ac19cfd982d1ddbd58007637ff7 ChangeLog 7800
-RMD160 8b3fd8e25185891f44cb7db6e4030eef23910cd6 ChangeLog 7800
-SHA256 66881b2bd091ae73433a02b99c755caf2406bcff66446fdde3f82a3cf02324bc ChangeLog 7800
+MISC ChangeLog 7943 RMD160 2d0c8674ee10e742577b0ede12b51a7d7d95500f SHA1 c374211d5e38725bc93c8e3656ce8ba12e686d2f SHA256 cd0e2df419a2d434b475204f81fffbd647900f6087e2aa8a77e7f0f3e59b7f07
+MD5 afdc6ddefd26a3791a8d9aa9bc8c78f4 ChangeLog 7943
+RMD160 2d0c8674ee10e742577b0ede12b51a7d7d95500f ChangeLog 7943
+SHA256 cd0e2df419a2d434b475204f81fffbd647900f6087e2aa8a77e7f0f3e59b7f07 ChangeLog 7943
MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
MD5 43628e9f5743b5c3b018a82669a76bc7 metadata.xml 166
RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 metadata.xml 166
@@ -41,16 +29,6 @@ SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 metadata
MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-pymol-0.99_rc10 0
RMD160 9c1185a5c5e9fc54612808977ee8f548b2258d31 files/digest-pymol-0.99_rc10 0
SHA256 e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 files/digest-pymol-0.99_rc10 0
-MD5 925dc45d0ae6070f5506dffc1d100975 files/digest-pymol-0.99_rc6-r2 247
-RMD160 505a34a7bebbbdd2c60913ea3ec7cd41164eeaff files/digest-pymol-0.99_rc6-r2 247
-SHA256 4644dbddb3d8af1a2956282b351c228ded4ebb2fe628a571e0e929922a1b485a files/digest-pymol-0.99_rc6-r2 247
MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-pymol-1.0-r1 0
RMD160 9c1185a5c5e9fc54612808977ee8f548b2258d31 files/digest-pymol-1.0-r1 0
SHA256 e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 files/digest-pymol-1.0-r1 0
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.4 (GNU/Linux)
-
-iD8DBQFGi+AkKhnDs22gwa8RApHfAJ0QeUgC1t5EawHuJGts4Qx0mK9IiACgy472
-Qugd0Wj6iS08NjSy0AiI0n8=
-=cMtk
------END PGP SIGNATURE-----
diff --git a/sci-chemistry/pymol/files/digest-pymol-0.99_rc6-r2 b/sci-chemistry/pymol/files/digest-pymol-0.99_rc6-r2
deleted file mode 100644
index 3a462090ec4e..000000000000
--- a/sci-chemistry/pymol/files/digest-pymol-0.99_rc6-r2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 cb29385ab523f648d4db47a222b1d03e pymol-0_99rc6-src.tgz 4198816
-RMD160 e9dc568dd38fffd37f306adf7e7a109d81dd4477 pymol-0_99rc6-src.tgz 4198816
-SHA256 d56bebc1316fd3442c54dee5bc4b2979041943bf50a9b34b44839595fd1b9a59 pymol-0_99rc6-src.tgz 4198816
diff --git a/sci-chemistry/pymol/files/pymol-0.99_rc6-data-path.patch b/sci-chemistry/pymol/files/pymol-0.99_rc6-data-path.patch
deleted file mode 100644
index 2ecad7f21b5f..000000000000
--- a/sci-chemistry/pymol/files/pymol-0.99_rc6-data-path.patch
+++ /dev/null
@@ -1,57 +0,0 @@
---- commanding.py.old 2006-03-15 21:10:36.000000000 -0500
-+++ commanding.py 2006-03-15 21:12:27.000000000 -0500
-@@ -121,7 +121,7 @@
- r = DEFAULT_ERROR
- mode = int(mode)
- if mode == 1: # just show PNG
-- png_path = cmd.exp_path("$PYMOL_PATH/data/pymol/splash.png")
-+ png_path = cmd.exp_path("$PYMOL_DATA/pymol/splash.png")
- if os.path.exists(png_path):
- cmd.do("_ cmd.load_png('%s',0,quiet=1)"%png_path)
- r = DEFAULT_SUCCESS
---- fitting.py.old 2006-03-15 21:14:01.000000000 -0500
-+++ fitting.py 2006-03-15 21:13:24.000000000 -0500
-@@ -61,7 +61,7 @@
- r = DEFAULT_ERROR
- source = selector.process(source)
- target = selector.process(target)
-- mfile = cmd.exp_path("$PYMOL_PATH/data/pymol/matrices/"+matrix)
-+ mfile = cmd.exp_path("$PYMOL_DATA/pymol/matrices/"+matrix)
- if object==None: object=''
- try:
- lock()
---- importing.py.old 2006-03-15 21:15:34.000000000 -0500
-+++ importing.py 2006-03-15 21:15:04.000000000 -0500
-@@ -176,7 +176,7 @@
- r = DEFAULT_ERROR
-
-
-- tables = { 'cmyk' : "$PYMOL_PATH/data/pymol/cmyk.png",
-+ tables = { 'cmyk' : "$PYMOL_DATA/pymol/cmyk.png",
- 'pymol' : 'pymol',
- 'rgb' : 'rgb' }
-
---- wizard/mutagenesis.py.old 2006-03-15 21:44:06.000000000 -0500
-+++ wizard/mutagenesis.py 2006-03-15 21:57:48.000000000 -0500
-@@ -35,8 +35,8 @@
-
- self.dep = default_dep
-
-- self.ind_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+
-- "/data/chempy/sidechains/sc_bb_ind.pkl")
-+ self.ind_library = io.pkl.fromFile(os.environ['PYMOL_DATA']+
-+ "/chempy/sidechains/sc_bb_ind.pkl")
- self.load_library()
- self.status = 0 # 0 no selection, 1 mutagenizing
- self.bump_check = 1
-@@ -107,8 +107,8 @@
- def load_library(self):
- if self.dep == 'dep':
- if not hasattr(self,'dep_library'):
-- self.dep_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+
-- "/data/chempy/sidechains/sc_bb_dep.pkl")
-+ self.dep_library = io.pkl.fromFile(os.environ['PYMOL_DATA']+
-+ "/chempy/sidechains/sc_bb_dep.pkl")
-
- def set_mode(self,mode):
- if mode in self.modes:
diff --git a/sci-chemistry/pymol/pymol-0.99_rc6-r2.ebuild b/sci-chemistry/pymol/pymol-0.99_rc6-r2.ebuild
deleted file mode 100644
index ea47b4796788..000000000000
--- a/sci-chemistry/pymol/pymol-0.99_rc6-r2.ebuild
+++ /dev/null
@@ -1,86 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-0.99_rc6-r2.ebuild,v 1.6 2007/06/01 17:34:49 nixnut Exp $
-
-inherit distutils eutils multilib
-
-MY_PV=${PV/_}
-MY_S_P="${PN}-${MY_PV}"
-MY_PV=${MY_PV/./_}
-MY_P="${PN}-${MY_PV}"
-
-DESCRIPTION="A Python-extensible molecular graphics system."
-HOMEPAGE="http://pymol.sourceforge.net/"
-SRC_URI="mirror://sourceforge/pymol/${MY_P}-src.tgz"
-
-LICENSE="PSF-2.2"
-IUSE=""
-SLOT="0"
-KEYWORDS="amd64 ppc x86"
-
-DEPEND="dev-lang/python
- dev-python/pmw
- dev-python/numeric
- dev-lang/tk
- media-libs/libpng
- sys-libs/zlib
- media-libs/glut"
-
-S="${WORKDIR}/${MY_S_P}"
-
-pkg_setup() {
- distutils_python_tkinter
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"/modules/${PN}
- epatch "${FILESDIR}"/${P}-data-path.patch
- cd "${S}"
- # Turn off splash screen. Please do make a project contribution
- # if you are able though.
- [[ -n "$WANT_NOSPLASH" ]] && epatch "${FILESDIR}"/nosplash-gentoo.patch
-
- # Respect CFLAGS
- sed -i \
- -e "s:\(ext_comp_args=\).*:\1[]:g" \
- "${S}"/setup.py
-}
-
-src_install() {
- python_version
-
- distutils_src_install
- cd "${S}"
-
- #The following three lines probably do not do their jobs and should be
- #changed
- PYTHONPATH="${D}/usr/$(get_libdir)/site-packages" ${python} setup2.py
-
- # These environment variables should not go in the wrapper script, or else
- # it will be impossible to use the PyMOL libraries from Python.
-cat >> "${T}"/20pymol << EOF
-PYMOL_PATH=/usr/lib/python${PYVER}/site-packages/pymol
-PYMOL_DATA="/usr/share/pymol/data"
-PYMOL_SCRIPTS="/usr/share/pymol/scripts"
-EOF
-
- doenvd "${T}"/20pymol || die "Failed to install env.d file."
-
- # Make our own wrapper
-cat >> "${T}"/pymol << EOF
-#!/bin/sh
-${python} \${PYMOL_PATH}/__init__.py \$*
-EOF
-
- exeinto /usr/bin
- doexe "${T}"/pymol || die "Failed to install wrapper."
- dodoc DEVELOPERS CHANGES || die "Failed to install docs."
-
- mv examples "${D}"/usr/share/doc/${PF}/ || die "Failed moving docs."
-
- dodir /usr/share/pymol
- mv test "${D}"/usr/share/pymol/ || die "Failed moving test files."
- mv data "${D}"/usr/share/pymol/ || die "Failed moving data files."
- mv scripts "${D}"/usr/share/pymol/ || die "Failed moving scripts."
-}