diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-05-11 12:39:56 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-05-11 12:39:56 +0000 |
| commit | c9e95f9a8ba7ddec04adea8f3c423189414cae1a (patch) | |
| tree | 04578e7b318950eb766ef74024e308291aaf1ca4 /sci-chemistry | |
| parent | add ~arm, bug #456736 (diff) | |
| download | historical-c9e95f9a8ba7ddec04adea8f3c423189414cae1a.tar.gz historical-c9e95f9a8ba7ddec04adea8f3c423189414cae1a.tar.bz2 historical-c9e95f9a8ba7ddec04adea8f3c423189414cae1a.zip | |
sci-chemistry/tm-align: Version Bump
Package-Manager: portage-2.2.0_alpha174/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-chemistry')
| -rw-r--r-- | sci-chemistry/tm-align/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-chemistry/tm-align/Manifest | 24 | ||||
| -rw-r--r-- | sci-chemistry/tm-align/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-chemistry/tm-align/tm-align-20130508.ebuild | 25 |
4 files changed, 45 insertions, 22 deletions
diff --git a/sci-chemistry/tm-align/ChangeLog b/sci-chemistry/tm-align/ChangeLog index 9ad60c485ab3..8afb55c3c08f 100644 --- a/sci-chemistry/tm-align/ChangeLog +++ b/sci-chemistry/tm-align/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/tm-align # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.4 2013/02/05 18:30:14 ulm Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.5 2013/05/11 12:39:55 jlec Exp $ + +*tm-align-20130508 (11 May 2013) + + 11 May 2013; Justin Lecher <jlec@gentoo.org> +tm-align-20130508.ebuild, + metadata.xml: + Version Bump 05 Feb 2013; Ulrich Müller <ulm@gentoo.org> tm-align-20120124.ebuild, tm-align-20120707.ebuild: diff --git a/sci-chemistry/tm-align/Manifest b/sci-chemistry/tm-align/Manifest index 782306f81602..4ab29d15de27 100644 --- a/sci-chemistry/tm-align/Manifest +++ b/sci-chemistry/tm-align/Manifest @@ -1,27 +1,19 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX CMakeLists.txt 182 SHA256 e6543e2fba46dc09d1892106b1d9c154485ee269d2b88c16a1973605fae44b53 SHA512 1e77edbfb2184e11c09fc2133eb40bd9d4b2fb04a30139134939482f4e817ebfa5c316e8d75a6fd5aa866ef1f6f56d65df924dc41cfb698330943e0bc433948d WHIRLPOOL 370a6b0e2ba20b7c7316aaba34b6dd6962673014fa7d2aee8ae04630b98abb24f5302eca80ea4c92d84fea149c98003d4b5c1ac44266a488cc937f06f51f6192 DIST TMtools20120124.tar.gz 919534 SHA256 0464557cdcbfb5559b96859f851f938ef63ada8bf990b9a2c4e49ec3659cc7c4 SHA512 5ef9f26f951efc2c07f3731b81c8deb99d78e3c03e13c9088971789675d4837a57c8af1843035353ebdf1e95079251d274554d6ee9c353fc407703a7a656dde6 WHIRLPOOL db48f11351dc62479208d134a56635e1f38667d0535464ae00f2e44255ddb2f09a2fc8dc880012ec4b858493f7528470171f111f1222ab70b9bcf8416a0f531f DIST TMtools20120707.tar.gz 928304 SHA256 c6558e67857ceffb3059a892f68a70bc0fad1a91d8f3c38292900af189d5492c SHA512 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<maintainer> + <email>jlec@gentoo.org</email> + </maintainer> + <longdescription> TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix. An optimal alignment between two proteins, as well as the TM-score, will be reported for each comparison. The diff --git a/sci-chemistry/tm-align/tm-align-20130508.ebuild b/sci-chemistry/tm-align/tm-align-20130508.ebuild new file mode 100644 index 000000000000..f7bb39e2ae0b --- /dev/null +++ b/sci-chemistry/tm-align/tm-align-20130508.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20130508.ebuild,v 1.1 2013/05/11 12:39:55 jlec Exp $ + +EAPI=5 + +inherit cmake-utils flag-o-matic fortran-2 + +DESCRIPTION="Quick & Accurate Structural Alignment" +HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/" +SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz" + +LICENSE="tm-align" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="static custom-cflags" + +S="${WORKDIR}" + +src_prepare() { + cp "${FILESDIR}"/CMakeLists.txt . || die + use static && append-fflags -static && append-ldflags -static + # recommended by upstream + use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math +} |