QA: Removed unused versions.

Package-Manager: portage-2.1.2_pre2-r1

17 files changed, 42 insertions, 564 deletions

diff --git a/sci-chemistry/raster3d/Manifest b/sci-chemistry/raster3d/Manifest
index 9461e226e47e..c7d0a9e47b5c 100644
--- a/sci-chemistry/raster3d/Manifest
+++ b/sci-chemistry/raster3d/Manifest
@@ -1,28 +1,30 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX raster3d-gcc-4.1-gentoo.patch 2423 RMD160 4ebc09f61759a2ef79239141197ad2ee1890c23a SHA1 a9cf625be7ba6e88499f2b753c693f86509d6ae1 SHA256 5b95136918411d0f33f31289d791c78046c5728950dafcf90dcbb52f100b18bc
 MD5 f359b8a66da6a239d4597dbfba835a5e files/raster3d-gcc-4.1-gentoo.patch 2423
 RMD160 4ebc09f61759a2ef79239141197ad2ee1890c23a files/raster3d-gcc-4.1-gentoo.patch 2423
 SHA256 5b95136918411d0f33f31289d791c78046c5728950dafcf90dcbb52f100b18bc files/raster3d-gcc-4.1-gentoo.patch 2423
-DIST Raster3D_2.6e.tar.gz 1757896 RMD160 38e9d48f3a24a409226b35e2d2c2f6394330f9e4 SHA256 a7b18b456c557bbcc4ee274edb1728d36691195dba463b79b1795ac7ff9b5c93
 DIST Raster3D_2.7c.tar.gz 1727387 RMD160 ebb41c0504646b8d965dbccad0f3cee1bfad0244 SHA1 b13e046d05b0f435dba6c09ebb0183454063b76d SHA256 7d5c450e83865fbafecbab3caabf38a8560b6c41982948a3b0e34d79c2c3381a
-EBUILD raster3d-2.6e.ebuild 1381 RMD160 5e436e37d6b084eb297b9556585150c75d57597c SHA1 54880249f1eb90004d022a209b2d8797c477433b SHA256 41a9c020def2c9b94fbee0e7b0272991cef755a3e88d80678e64eaf339106a4b
-MD5 e2fd65185f0124e78febbf57d89ee724 raster3d-2.6e.ebuild 1381
-RMD160 5e436e37d6b084eb297b9556585150c75d57597c raster3d-2.6e.ebuild 1381
-SHA256 41a9c020def2c9b94fbee0e7b0272991cef755a3e88d80678e64eaf339106a4b raster3d-2.6e.ebuild 1381
 EBUILD raster3d-2.7c.ebuild 1734 RMD160 8be900b1c723a0ce7a83633c5d774320a9dff2ca SHA1 27b9c76ae36d38d1fa1fcafd5b53b2d5d2958f63 SHA256 e2acdc2178c9240c01b992df332f3fdf981d74096024cdd9fe17f08c582f656a
 MD5 6a34ef18bf8e644c5670d9eb6a63f8e4 raster3d-2.7c.ebuild 1734
 RMD160 8be900b1c723a0ce7a83633c5d774320a9dff2ca raster3d-2.7c.ebuild 1734
 SHA256 e2acdc2178c9240c01b992df332f3fdf981d74096024cdd9fe17f08c582f656a raster3d-2.7c.ebuild 1734
-MISC ChangeLog 2002 RMD160 8bb5c77b8c53e6a1f5f4e9c1853a17b97b9b9737 SHA1 e443a4b468bf05bb1c8a2af30df9da8905650349 SHA256 f7316c927e1afca03b35e9c971608385bede694ac9719cb3a915a342df568121
-MD5 909c93eab2b47d057f856500f19af160 ChangeLog 2002
-RMD160 8bb5c77b8c53e6a1f5f4e9c1853a17b97b9b9737 ChangeLog 2002
-SHA256 f7316c927e1afca03b35e9c971608385bede694ac9719cb3a915a342df568121 ChangeLog 2002
+MISC ChangeLog 2109 RMD160 24ca6eb4a4e9955b6cc9feaee364c8b2f50a0209 SHA1 8cd61b627a737e00e66276a6c6b47c45d00b29e1 SHA256 ae8a864ccdb60b5820d8398bcc299d17ab9518bd82495b6e3038cd2f90fc71fb
+MD5 3c012bacadfd2b3b1be10df943584a5d ChangeLog 2109
+RMD160 24ca6eb4a4e9955b6cc9feaee364c8b2f50a0209 ChangeLog 2109
+SHA256 ae8a864ccdb60b5820d8398bcc299d17ab9518bd82495b6e3038cd2f90fc71fb ChangeLog 2109
 MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
 MD5 43628e9f5743b5c3b018a82669a76bc7 metadata.xml 166
 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 metadata.xml 166
 SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 metadata.xml 166
-MD5 2af94f19951224fb090552862b9c1fc2 files/digest-raster3d-2.6e 244
-RMD160 3b7e17e4e23b6253532b0c3cc500a6f84fa23e61 files/digest-raster3d-2.6e 244
-SHA256 b697c83e7ed79b35d3802009be257f6be80a224f7c038f955dd1ef36eb194fdc files/digest-raster3d-2.6e 244
 MD5 2282d222050f006a9665130cdc15e1be files/digest-raster3d-2.7c 244
 RMD160 7139b19e868f8a746759bb109bfbd00129d250f1 files/digest-raster3d-2.7c 244
 SHA256 08e0eaad3ab2a21897957788b38890843ef751389785b8cf724842402010d358 files/digest-raster3d-2.7c 244
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v1.4.4 (GNU/Linux)
+
+iD8DBQFFoYlX5mJXAu5GbtIRAsZOAJ9WwT7AeMeyjMOUWUZIumMCdzMJRQCfRF/W
+BrR8xZTuBuAiAbgW0Y2T7fU=
+=Y32i
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/raster3d/files/digest-raster3d-2.6e b/sci-chemistry/raster3d/files/digest-raster3d-2.6e
deleted file mode 100644
index 3636f603dc76..000000000000
--- a/sci-chemistry/raster3d/files/digest-raster3d-2.6e
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e34d6ca124b402ff3528fbe874b5d09d Raster3D_2.6e.tar.gz 1757896
-RMD160 38e9d48f3a24a409226b35e2d2c2f6394330f9e4 Raster3D_2.6e.tar.gz 1757896
-SHA256 a7b18b456c557bbcc4ee274edb1728d36691195dba463b79b1795ac7ff9b5c93 Raster3D_2.6e.tar.gz 1757896
diff --git a/sci-chemistry/raster3d/raster3d-2.6e.ebuild b/sci-chemistry/raster3d/raster3d-2.6e.ebuild
deleted file mode 100644
index 9f7490033513..000000000000
--- a/sci-chemistry/raster3d/raster3d-2.6e.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/raster3d/raster3d-2.6e.ebuild,v 1.2 2006/04/11 04:50:05 markusle Exp $
-
-Name="Raster3D"
-S="${WORKDIR}/${Name}_${PV}"
-DESCRIPTION="a set of tools for generating high quality raster images of proteins or other molecules"
-HOMEPAGE="http://www.bmsc.washington.edu/raster3d/raster3d.html"
-SRC_URI="http://www.bmsc.washington.edu/${PN}/${Name}_${PV}.tar.gz"
-
-LICENSE="as-is"
-SLOT="0"
-IUSE=""
-KEYWORDS="x86"
-
-RDEPEND="media-libs/jpeg
-	media-libs/libpng
-	media-libs/tiff"
-
-DEPEND="${RDEPEND}
-	|| ( x11-misc/imake virtual/x11 )"
-
-src_compile() {
-	sed "/prefix/s/\/usr\/local/\/usr/" ${S}/Makefile.template > ${S}/Makefile.template.new
-	mv ${S}/Makefile.template.new ${S}/Makefile.template
-
-	make linux
-	make all || die
-}
-
-src_install() {
-	dodir /usr/bin
-	dodir /usr/share/Raster3D/materials
-	dodir /usr/share/Raster3D/html
-	dodir /usr/share/Raster3D/examples
-	dodir /usr/share/man/man1
-
-	emake \
-			prefix=${D}/usr \
-			bindir=${D}/usr/bin \
-			datadir=${D}/usr/share/Raster3D/materials \
-			mandir=${D}/usr/share/man/man1 \
-			htmldir=${D}/usr/share/Raster3D/html \
-			examdir=${D}/usr/share/Raster3D/examples \
-			install || die
-
-	dodir /etc/env.d
-	echo -e "R3D_LIB=/usr/share/Raster3D/materials" > \
-			${D}/etc/env.d/10raster3d
-}
diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest
index e6c1f109f4c9..1dd91f5d5187 100644
--- a/sci-chemistry/vmd/Manifest
+++ b/sci-chemistry/vmd/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX vmd-1.8.4-config-gentoo.patch 4246 RMD160 61aa7bff404a775e5e6be01c42654eeb69a7711f SHA1 51e80f1887cb7a00b554359c809a960b22851b57 SHA256 0be5b5d67a5198929b4c3db8c0dfa3a7a69150f02b075d7bafe0255825bdcbb9
 MD5 6325ce1d0cbfe7731240deef3d69efa5 files/vmd-1.8.4-config-gentoo.patch 4246
 RMD160 61aa7bff404a775e5e6be01c42654eeb69a7711f files/vmd-1.8.4-config-gentoo.patch 4246
@@ -14,34 +17,26 @@ AUX vmd-1.8.5-config-gentoo.patch 4714 RMD160 192224a4a05e249c357f08e13d0811dcfb
 MD5 d6b046bc901c4b95ac869c6298c03f3e files/vmd-1.8.5-config-gentoo.patch 4714
 RMD160 192224a4a05e249c357f08e13d0811dcfb60f7ea files/vmd-1.8.5-config-gentoo.patch 4714
 SHA256 8e7ac5124de52dbef9469c8416b1f011ffe3420043c5a58c2183b67dd66a6be9 files/vmd-1.8.5-config-gentoo.patch 4714
-DIST vmd-1.8.4.src.tar.gz 12042149 RMD160 f49a68ae63a607cd37a58d894df2f22d7df55b85 SHA1 0a19265074bf8c2fa688485018204f452c8daf92 SHA256 29b046767f1efe90d5f3e3dbbdcd4988d5335d1db226405f5ddb9f171c811cac
 DIST vmd-1.8.5.src.tar.gz 17106456 RMD160 70087a42ae20180f2ed18cc4492764ed24b19aa4 SHA1 c3da36d75262b75423ddd2a07c17415b9859504a SHA256 208d7829e4fc2744e30c778e1485b96d35018b1e0dbc02388630ce4a2733c30b
-EBUILD vmd-1.8.4-r1.ebuild 4003 RMD160 64ef2882391b5b051e1fea41ee4fd6e9e7607d4c SHA1 77dcb634ec0bcd6b82a1cd9c22b4e4a6624c0aa0 SHA256 4914216543216e69c2bffc4dca6539ed83119cf14e353dbfa1922923163dd728
-MD5 36562b0ecc187afe09e61581d116f694 vmd-1.8.4-r1.ebuild 4003
-RMD160 64ef2882391b5b051e1fea41ee4fd6e9e7607d4c vmd-1.8.4-r1.ebuild 4003
-SHA256 4914216543216e69c2bffc4dca6539ed83119cf14e353dbfa1922923163dd728 vmd-1.8.4-r1.ebuild 4003
-EBUILD vmd-1.8.4.ebuild 3744 RMD160 feaaa172c06211db51b474f60cc8abfc97aef4ea SHA1 124718556e8d5aabb6fc0479994095bfbdef1a70 SHA256 bcf706a28add41d94d5ac2120d448c8210203f67fada754161f116955bc24d8b
-MD5 e494359bcb14b7fe3f295f118c7c5f7b vmd-1.8.4.ebuild 3744
-RMD160 feaaa172c06211db51b474f60cc8abfc97aef4ea vmd-1.8.4.ebuild 3744
-SHA256 bcf706a28add41d94d5ac2120d448c8210203f67fada754161f116955bc24d8b vmd-1.8.4.ebuild 3744
 EBUILD vmd-1.8.5.ebuild 4118 RMD160 32fe8507cbab20939a01ac8df1a2cde388223ce6 SHA1 f1b02ea48248eeef051c3c48004ef5e47d9bb3a9 SHA256 7a21e404aaaebf1d3c3ebd6a259f4af704a22b8586e3d98dda6978211d5a147b
 MD5 424d8c1a087c47c1e24f47ef6f4cd0c9 vmd-1.8.5.ebuild 4118
 RMD160 32fe8507cbab20939a01ac8df1a2cde388223ce6 vmd-1.8.5.ebuild 4118
 SHA256 7a21e404aaaebf1d3c3ebd6a259f4af704a22b8586e3d98dda6978211d5a147b vmd-1.8.5.ebuild 4118
-MISC ChangeLog 2393 RMD160 48f88fd4f979ad9c70f0769e7bfee61517b0c873 SHA1 3ba656ecc2c6b29632334e713156d341a2849c1f SHA256 ee3d407b98add161dfe082c3f18791b142b3e514edbb41bcdeb35544f066c6a1
-MD5 0e07df5003ee813cd186c8bcbcffa504 ChangeLog 2393
-RMD160 48f88fd4f979ad9c70f0769e7bfee61517b0c873 ChangeLog 2393
-SHA256 ee3d407b98add161dfe082c3f18791b142b3e514edbb41bcdeb35544f066c6a1 ChangeLog 2393
+MISC ChangeLog 2521 RMD160 a986021ffabfd109829223b19fb715186803e927 SHA1 eef0b1f6cc2baaf64b6fcf9fd271886cf75a33b5 SHA256 dba0f86d6116e0ea7944ac6ccf423dfe55a014d607e41ca7606e5a6c592a9994
+MD5 057a363ef58730f5dcf07ed357121c41 ChangeLog 2521
+RMD160 a986021ffabfd109829223b19fb715186803e927 ChangeLog 2521
+SHA256 dba0f86d6116e0ea7944ac6ccf423dfe55a014d607e41ca7606e5a6c592a9994 ChangeLog 2521
 MISC metadata.xml 282 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 SHA1 7f42dcea44641b8a77ab9644791344ec6ed6c327 SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349
 MD5 cf7436fe44a27481d1001082eb06326e metadata.xml 282
 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 metadata.xml 282
 SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349 metadata.xml 282
-MD5 6938330c3067d798a3014e5b9808d45d files/digest-vmd-1.8.4 247
-RMD160 64861c785c0dc69121006bec5a4ee50b2680c15d files/digest-vmd-1.8.4 247
-SHA256 778a381e0c4131689eb531ef9eb3e2658318510fd68ee09d5f014c33159fd466 files/digest-vmd-1.8.4 247
-MD5 6938330c3067d798a3014e5b9808d45d files/digest-vmd-1.8.4-r1 247
-RMD160 64861c785c0dc69121006bec5a4ee50b2680c15d files/digest-vmd-1.8.4-r1 247
-SHA256 778a381e0c4131689eb531ef9eb3e2658318510fd68ee09d5f014c33159fd466 files/digest-vmd-1.8.4-r1 247
 MD5 147e30ebf64237e28be760bc5504caaf files/digest-vmd-1.8.5 247
 RMD160 6841d16295791a86c1e65c14593aec2bc3156cc4 files/digest-vmd-1.8.5 247
 SHA256 d4d4f88e2ab30537dc0995069a237ba823ac798e6d37a84ad7bbf7aecfd179d7 files/digest-vmd-1.8.5 247
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v1.4.4 (GNU/Linux)
+
+iD8DBQFFoYtY5mJXAu5GbtIRArqQAJ9BE51HKyHQV7UTHGVpWisvHSWyYwCfc/i2
+cvW8MZXEFW/4bCqGEshCHl4=
+=j9M4
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/vmd/files/digest-vmd-1.8.4 b/sci-chemistry/vmd/files/digest-vmd-1.8.4
deleted file mode 100644
index 9ea1e6202b57..000000000000
--- a/sci-chemistry/vmd/files/digest-vmd-1.8.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3cf6f2e23898ace4ffe022115470ec28 vmd-1.8.4.src.tar.gz 12042149
-RMD160 f49a68ae63a607cd37a58d894df2f22d7df55b85 vmd-1.8.4.src.tar.gz 12042149
-SHA256 29b046767f1efe90d5f3e3dbbdcd4988d5335d1db226405f5ddb9f171c811cac vmd-1.8.4.src.tar.gz 12042149
diff --git a/sci-chemistry/vmd/files/digest-vmd-1.8.4-r1 b/sci-chemistry/vmd/files/digest-vmd-1.8.4-r1
deleted file mode 100644
index 9ea1e6202b57..000000000000
--- a/sci-chemistry/vmd/files/digest-vmd-1.8.4-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3cf6f2e23898ace4ffe022115470ec28 vmd-1.8.4.src.tar.gz 12042149
-RMD160 f49a68ae63a607cd37a58d894df2f22d7df55b85 vmd-1.8.4.src.tar.gz 12042149
-SHA256 29b046767f1efe90d5f3e3dbbdcd4988d5335d1db226405f5ddb9f171c811cac vmd-1.8.4.src.tar.gz 12042149
diff --git a/sci-chemistry/vmd/vmd-1.8.4-r1.ebuild b/sci-chemistry/vmd/vmd-1.8.4-r1.ebuild
deleted file mode 100644
index fcc3ccbbc917..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.4-r1.ebuild
+++ /dev/null
@@ -1,152 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.4-r1.ebuild,v 1.1 2006/08/13 17:48:01 markusle Exp $
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~ppc ~x86"
-IUSE="hardened"
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
-	|| ( x11-libs/libXft virtual/x11 )
-	virtual/opengl
-	x11-libs/fltk
-	sci-libs/netcdf
-	=dev-lang/tcl-8.4*
-	=dev-lang/tk-8.4*
-	>=dev-lang/python-2.3
-	sci-biology/stride
-	hardened? ( sys-apps/paxctl )"
-
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
-	echo
-	einfo "Please download ${SRC_URI} from"
-	einfo "${VMD_DOWNLOAD}"
-	einfo "after agreeing to the license and then move it to "
-	einfo "${DISTDIR}"
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-
-	# apply LINUX-arch patches to vmd configure
-	epatch "${FILESDIR}"/${P}-config-gentoo.patch
-	epatch "${FILESDIR}"/${P}-plugin-autopsf.patch
-	epatch "${FILESDIR}"/${P}-paratool.patch
-
-	# prepare the plugins 
-
-	cd "${WORKDIR}"/plugins
-
-	sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
-	    -e "s/CXX = g++/CXX = $(tc-getCXX)/" \
-		-e "s/COPTO = -o /COPTO = -fPIC -o /" \
-		-e "s/LOPTO = -o /LOPTO = -fPIC -o /" \
-		-e "s/CCFLAGS = -O2 -Wall/CCFLAGS = ${CFLAGS}/" \
-		-e "s/CXXFLAGS = -O2 -Wall/CXXFLAGS = ${CXXFLAGS}/" \
-	    -i Make-arch || die "Failed to set up plugins Makefile"
-
-	# prepare vmd itself
-
-	cd "${S}"
-
-	sed -e "s:gentoo-bindir:${D}/usr/bin:" \
-		-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust install paths"
-
-
-	sed -e "s:gentoo-gcc:$(tc-getCC):" \
-		-e "s:gentoo-g++:$(tc-getCXX):" \
-		-e "s:gentoo-cflags:${CFLAGS}:" \
-		-i configure || die "Failed to adjust C compiler/flags"
-
-
-	sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-		-i configure || die "Failed to set up linking to plugin files"
-
-	sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
-		-e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
-		-i configure || die "failed setting up fltk"
-
-
-	# get installed python version
-	python_version
-	local PY="python${PYVER}"
-
-	sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
-		-e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
-		-e "s:gentoo-python-link:${PY}:" \
-		-i configure || die "failed setting up python"
-
-	sed -e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-i ${S}/bin/vmd || die "failed setting up vmd wrapper script"
-
-	local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON"
-
-	rm -f configure.options && echo $myconfig >> configure.options
-
-	./configure &> /dev/null || die "failed to configure"
-
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-	make LINUX TCLINC="-I/usr/include" \
-		TCLLIB="-L/usr/$(get_libdir)/tcl8.4" || \
-		die "failed to build plugins"
-
-	# build vmd
-	cd "${S}"/src
-	make || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
-		die "failed to install plugins"
-
-	# install vmd 
-	cd "${S}"/src
-	make install || die "failed to install vmd"
-
-	# export STRIDE_BIN so VMD find stride
-	echo "STRIDE_BIN=/usr/bin/stride" > ${T}/99${PN} || \
-		die "Failed to create vmd env file"
-	doenvd ${T}/99${PN} || die "Failed to install vmd env file"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
-	# remove some of the things we don't want and need in 
-	# /usr/lib
-	cd "${D}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
-		|| die "failed to set up vmd wrapper script"
-
-	# adjust paxctl settings on hardened systems
-	if use hardened; then
-		/sbin/paxctl -pemrxs ${D}/usr/$(get_libdir)/${PN}/${PN}_LINUX
-	fi
-}
-
diff --git a/sci-chemistry/vmd/vmd-1.8.4.ebuild b/sci-chemistry/vmd/vmd-1.8.4.ebuild
deleted file mode 100644
index 3f922a75aa9b..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.4.ebuild
+++ /dev/null
@@ -1,146 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.4.ebuild,v 1.1 2006/04/18 02:04:56 markusle Exp $
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~ppc ~x86"
-IUSE="hardened"
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
-	|| ( x11-libs/libXft virtual/x11 )
-	virtual/opengl
-	x11-libs/fltk
-	sci-libs/netcdf
-	=dev-lang/tcl-8.4*
-	=dev-lang/tk-8.4*
-	>=dev-lang/python-2.3
-	hardened? ( sys-apps/paxctl )"
-
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
-	echo
-	einfo "Please download ${SRC_URI} from"
-	einfo "${VMD_DOWNLOAD}"
-	einfo "after agreeing to the license and then move it to "
-	einfo "${DISTDIR}"
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-
-	# apply LINUX-arch patches to vmd configure
-	epatch "${FILESDIR}"/${P}-config-gentoo.patch
-	epatch "${FILESDIR}"/${P}-plugin-autopsf.patch
-
-
-	# prepare the plugins 
-
-	cd "${WORKDIR}"/plugins
-
-	sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
-	    -e "s/CXX = g++/CXX = $(tc-getCXX)/" \
-		-e "s/COPTO = -o /COPTO = -fPIC -o /" \
-		-e "s/LOPTO = -o /LOPTO = -fPIC -o /" \
-		-e "s/CCFLAGS = -O2 -Wall/CCFLAGS = ${CFLAGS}/" \
-		-e "s/CXXFLAGS = -O2 -Wall/CXXFLAGS = ${CXXFLAGS}/" \
-	    -i Make-arch || die "Failed to set up plugins Makefile"
-
-	# prepare vmd itself
-
-	cd "${S}"
-
-	sed -e "s:gentoo-bindir:${D}/usr/bin:" \
-		-e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust install paths"
-
-
-	sed -e "s:gentoo-gcc:$(tc-getCC):" \
-		-e "s:gentoo-g++:$(tc-getCXX):" \
-		-e "s:gentoo-cflags:${CFLAGS}:" \
-		-i configure || die "Failed to adjust C compiler/flags"
-
-
-	sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-		-i configure || die "Failed to set up linking to plugin files"
-
-	sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
-		-e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
-		-i configure || die "failed setting up fltk"
-
-
-	# get installed python version
-	python_version
-	local PY="python${PYVER}"
-
-	sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
-		-e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
-		-e "s:gentoo-python-link:${PY}:" \
-		-i configure || die "failed setting up python"
-
-	sed -e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-i ${S}/bin/vmd || die "failed setting up vmd wrapper script"
-
-	local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON"
-
-	rm -f configure.options && echo $myconfig >> configure.options
-
-	./configure &> /dev/null || die "failed to configure"
-
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-	make LINUX TCLINC="-I/usr/include" \
-		TCLLIB="-L/usr/$(get_libdir)/tcl8.4" || \
-		die "failed to build plugins"
-
-	# build vmd
-	cd "${S}"/src
-	make || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
-		die "failed to install plugins"
-
-	# install vmd 
-	cd "${S}"/src
-	make install || die "failed to install vmd"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
-	# remove some of the things we don't want and need in 
-	# /usr/lib
-	cd "${D}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
-		|| die "failed to set up vmd wrapper script"
-
-	# adjust paxctl settings on hardened systems
-	if use hardened; then
-		/sbin/paxctl -pemrxs ${D}/usr/$(get_libdir)/${PN}/${PN}_LINUX
-	fi
-}
-
diff --git a/sci-chemistry/xdrawchem/Manifest b/sci-chemistry/xdrawchem/Manifest
index d4c3cf6992e0..ba8378ee8665 100644
--- a/sci-chemistry/xdrawchem/Manifest
+++ b/sci-chemistry/xdrawchem/Manifest
@@ -1,48 +1,26 @@
-DIST xdrawchem-1.9.5.tar.gz 852256
-DIST xdrawchem-1.9.6.tar.gz 871506
-DIST xdrawchem-1.9.7.tar.gz 1498266
-DIST xdrawchem-1.9.8.tar.gz 981425
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 DIST xdrawchem-1.9.9.tar.gz 982481 RMD160 7722ff9f1ff0adc2c7634df33a0acaa0e43353b9 SHA1 a8e6097e39a04df8df76bb699afdb2660ff15b0e SHA256 33e45ee8b937ba4ea77fb28adca66195943715a941039a95d0a4bed09d4cf9e3
-EBUILD xdrawchem-1.9.5.ebuild 927 RMD160 10fb1d8bfa90a49be92e9445433af77d965e51dd SHA1 eaf8473bcd8d03a9b5131d3cddade400e45b4d3f SHA256 725c88487a50c0d14aea3d504694613a403933655e67bbbd9a463b0f4a54b02f
-MD5 6909a5491cc0f57fafdb80ea8d309a57 xdrawchem-1.9.5.ebuild 927
-RMD160 10fb1d8bfa90a49be92e9445433af77d965e51dd xdrawchem-1.9.5.ebuild 927
-SHA256 725c88487a50c0d14aea3d504694613a403933655e67bbbd9a463b0f4a54b02f xdrawchem-1.9.5.ebuild 927
-EBUILD xdrawchem-1.9.6.ebuild 926 RMD160 e05cf58f9a85f3dc3dbcb3cf77ccc305ad0b8b93 SHA1 0bbd4d160bbd96084da514647e5782f2b27864ef SHA256 d2ade0bb92b8e28a3040c75a34dcaa756fb4340ff4b5b1b5e56019d37fb6f471
-MD5 8d05840e5720db255ab56d30c196dc09 xdrawchem-1.9.6.ebuild 926
-RMD160 e05cf58f9a85f3dc3dbcb3cf77ccc305ad0b8b93 xdrawchem-1.9.6.ebuild 926
-SHA256 d2ade0bb92b8e28a3040c75a34dcaa756fb4340ff4b5b1b5e56019d37fb6f471 xdrawchem-1.9.6.ebuild 926
-EBUILD xdrawchem-1.9.7.ebuild 929 RMD160 1edad04d55be0febcf0be0575581cc36d24816e3 SHA1 354a7365d412501dce73bc37cd1d294bba9932e1 SHA256 ac5d2c5fabb75eb8e2b4d2bedadb571f15d8a665d57c2f1d94ae4fa102d66ad7
-MD5 921ddb60a1c083cc73b1473104bd07aa xdrawchem-1.9.7.ebuild 929
-RMD160 1edad04d55be0febcf0be0575581cc36d24816e3 xdrawchem-1.9.7.ebuild 929
-SHA256 ac5d2c5fabb75eb8e2b4d2bedadb571f15d8a665d57c2f1d94ae4fa102d66ad7 xdrawchem-1.9.7.ebuild 929
-EBUILD xdrawchem-1.9.8.ebuild 929 RMD160 9ff7866a2b92972b526971bfb6abaa665b51a9fa SHA1 079ef2379fd8d14dfcb77c7477b89595ae93add7 SHA256 15418faa1f34aaa29c1db351ba357a2e9fb404e558517394b56d893a98aee091
-MD5 9c63c81e6e82b0cf6e8ddc3b1c46d048 xdrawchem-1.9.8.ebuild 929
-RMD160 9ff7866a2b92972b526971bfb6abaa665b51a9fa xdrawchem-1.9.8.ebuild 929
-SHA256 15418faa1f34aaa29c1db351ba357a2e9fb404e558517394b56d893a98aee091 xdrawchem-1.9.8.ebuild 929
 EBUILD xdrawchem-1.9.9.ebuild 919 RMD160 4c7cc8df734ec75fe8c31044e64ffed9268bf831 SHA1 79444f300bc79b5dd040eaa559808f74437811ae SHA256 0c701fb9afc8e415814824a5cd793e58ae572721ce82dc695f6c849763d2c49c
 MD5 ac6ff3bb401c70d3928b8aa5d7d4c96f xdrawchem-1.9.9.ebuild 919
 RMD160 4c7cc8df734ec75fe8c31044e64ffed9268bf831 xdrawchem-1.9.9.ebuild 919
 SHA256 0c701fb9afc8e415814824a5cd793e58ae572721ce82dc695f6c849763d2c49c xdrawchem-1.9.9.ebuild 919
-MISC ChangeLog 9093 RMD160 dca57f405363b429ed4d713607e8351560ef18cd SHA1 7b34e175f539f5bcc96935e9331969ea0a27dc17 SHA256 2a5ddb393a2b9aa557bcb8a15945eef76632b23945d180b950ea0d31f0b29599
-MD5 7e1e0e3d7f4f49b2ca256a37615dee27 ChangeLog 9093
-RMD160 dca57f405363b429ed4d713607e8351560ef18cd ChangeLog 9093
-SHA256 2a5ddb393a2b9aa557bcb8a15945eef76632b23945d180b950ea0d31f0b29599 ChangeLog 9093
+MISC ChangeLog 9279 RMD160 8130cec4c4a592bb79ce24da127bc40128713709 SHA1 e3e08b1b0ad6e4dbf781a948770092d987aef036 SHA256 cc6408115e5de198ce5a530cb4ba6d992cd8d659996d623204c5b37cab4329a7
+MD5 cf3b70d421fb467d0cb30cfe85b6be74 ChangeLog 9279
+RMD160 8130cec4c4a592bb79ce24da127bc40128713709 ChangeLog 9279
+SHA256 cc6408115e5de198ce5a530cb4ba6d992cd8d659996d623204c5b37cab4329a7 ChangeLog 9279
 MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
 MD5 43628e9f5743b5c3b018a82669a76bc7 metadata.xml 166
 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 metadata.xml 166
 SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 metadata.xml 166
-MD5 b91307b158c81f4550e6103553f4d024 files/digest-xdrawchem-1.9.5 67
-RMD160 6c232847eaff5a5369a80e86ff7481ae54815de7 files/digest-xdrawchem-1.9.5 67
-SHA256 b669ea74e5d41bf0192a7f205a36b00258f80fee5858b407dde8898910e3a322 files/digest-xdrawchem-1.9.5 67
-MD5 fff76abd1dffe8c52d85f0fabb8304d0 files/digest-xdrawchem-1.9.6 67
-RMD160 04420383cdb62fd13ca2c5da116fee9d471bd23c files/digest-xdrawchem-1.9.6 67
-SHA256 4e29538f36e8022cfd6ee126582a891a818218e34b8ccf2b9add339ab269b017 files/digest-xdrawchem-1.9.6 67
-MD5 edcd92df02e6119b4f7fc1ad87db2d46 files/digest-xdrawchem-1.9.7 68
-RMD160 e3e28704cacc821d860cd70061984ce9bcd2ac4d files/digest-xdrawchem-1.9.7 68
-SHA256 607f27e148426fa13c0a6d43a2dcdf5806c85acae99aac10ec3dcd971bfd1065 files/digest-xdrawchem-1.9.7 68
-MD5 d3e67b0636e6007f67b755e68bc27182 files/digest-xdrawchem-1.9.8 67
-RMD160 e046a6ba291c5ed2cfe8ce3f7aa29a78d04de46e files/digest-xdrawchem-1.9.8 67
-SHA256 9b71009bc8c3f87de898d65ca39f4ebfae818ada8cba136ddd57b20de57e457d files/digest-xdrawchem-1.9.8 67
 MD5 efd515b07f539e1f84456c8906777eec files/digest-xdrawchem-1.9.9 247
 RMD160 3a5d52f2f8970b23b1f3dd8e9210b6158dda1dc1 files/digest-xdrawchem-1.9.9 247
 SHA256 00ed8e451a8ad20b184a2af71f8bfc472cf6b604f6f3c2d020609eeeda843ec5 files/digest-xdrawchem-1.9.9 247
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v1.4.4 (GNU/Linux)
+
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+WMw5xyY7wKPMkISNmkKZXO4=
+=xl/w
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.5 b/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.5
deleted file mode 100644
index 12e530cb3568..000000000000
--- a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.5
+++ /dev/null
@@ -1 +0,0 @@
-MD5 cb3782d6b76f96682dbcd5837b24802f xdrawchem-1.9.5.tar.gz 852256
diff --git a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.6 b/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.6
deleted file mode 100644
index a5d3c8e5f10b..000000000000
--- a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.6
+++ /dev/null
@@ -1 +0,0 @@
-MD5 006f055290a7067540ddea6ee938d9e5 xdrawchem-1.9.6.tar.gz 871506
diff --git a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.7 b/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.7
deleted file mode 100644
index 0d730d056f4d..000000000000
--- a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.7
+++ /dev/null
@@ -1 +0,0 @@
-MD5 fd5ac611346eed3efe999f2492769d99 xdrawchem-1.9.7.tar.gz 1498266
diff --git a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.8 b/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.8
deleted file mode 100644
index b7d45972b189..000000000000
--- a/sci-chemistry/xdrawchem/files/digest-xdrawchem-1.9.8
+++ /dev/null
@@ -1 +0,0 @@
-MD5 81e434bfbd9a993d49cc6d6aea7b1589 xdrawchem-1.9.8.tar.gz 981425
diff --git a/sci-chemistry/xdrawchem/xdrawchem-1.9.5.ebuild b/sci-chemistry/xdrawchem/xdrawchem-1.9.5.ebuild
deleted file mode 100644
index c9b70a8f764a..000000000000
--- a/sci-chemistry/xdrawchem/xdrawchem-1.9.5.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdrawchem/xdrawchem-1.9.5.ebuild,v 1.6 2006/05/13 22:07:49 spyderous Exp $
-
-inherit qt3
-
-DESCRIPTION="Molecular structure drawing program"
-HOMEPAGE="http://xdrawchem.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="x86 sparc ~amd64 ~ppc"
-IUSE=""
-
-DEPEND="$(qt_min_version 3.1)
-	>=sys-devel/gcc-3.2
-	dev-util/pkgconfig
-	=sci-chemistry/openbabel-1.1*"
-
-src_compile() {
-	# make sure we use moc from Qt, not from eg media-sound/moc
-	PATH="${QTDIR}/bin:${PATH}"
-	econf || die "econf failed."
-	emake || die "emake failed."
-}
-
-src_install() {
-	make DESTDIR=${D} install || die "make install failed."
-	cd ${D}/usr/share
-	dodir /usr/share/doc
-	mv xdrawchem/doc doc/${PF}
-	dosym /usr/share/doc/${PF} /usr/share/xdrawchem/doc
-}
diff --git a/sci-chemistry/xdrawchem/xdrawchem-1.9.6.ebuild b/sci-chemistry/xdrawchem/xdrawchem-1.9.6.ebuild
deleted file mode 100644
index af319514f40b..000000000000
--- a/sci-chemistry/xdrawchem/xdrawchem-1.9.6.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdrawchem/xdrawchem-1.9.6.ebuild,v 1.6 2006/05/13 22:07:49 spyderous Exp $
-
-inherit qt3
-
-DESCRIPTION="Molecular structure drawing program"
-HOMEPAGE="http://xdrawchem.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~ppc sparc x86"
-IUSE=""
-
-DEPEND="$(qt_min_version 3.1)
-	>=sys-devel/gcc-3.2
-	dev-util/pkgconfig
-	=sci-chemistry/openbabel-1.1*"
-
-src_compile() {
-	# make sure we use moc from Qt, not from eg media-sound/moc
-	PATH="${QTDIR}/bin:${PATH}"
-	econf || die "econf failed."
-	emake || die "emake failed."
-}
-
-src_install() {
-	make DESTDIR=${D} install || die "make install failed."
-	cd ${D}/usr/share
-	dodir /usr/share/doc
-	mv xdrawchem/doc doc/${PF}
-	dosym /usr/share/doc/${PF} /usr/share/xdrawchem/doc
-}
diff --git a/sci-chemistry/xdrawchem/xdrawchem-1.9.7.ebuild b/sci-chemistry/xdrawchem/xdrawchem-1.9.7.ebuild
deleted file mode 100644
index 306c8b39e601..000000000000
--- a/sci-chemistry/xdrawchem/xdrawchem-1.9.7.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdrawchem/xdrawchem-1.9.7.ebuild,v 1.2 2006/05/13 22:07:49 spyderous Exp $
-
-inherit qt3
-
-DESCRIPTION="Molecular structure drawing program"
-HOMEPAGE="http://xdrawchem.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~x86 ~sparc ~amd64 ~ppc"
-IUSE=""
-
-DEPEND="$(qt_min_version 3.1)
-	>=sys-devel/gcc-3.2
-	dev-util/pkgconfig
-	=sci-chemistry/openbabel-1.1*"
-
-src_compile() {
-	# make sure we use moc from Qt, not from eg media-sound/moc
-	PATH="${QTDIR}/bin:${PATH}"
-	econf || die "econf failed."
-	emake || die "emake failed."
-}
-
-src_install() {
-	make DESTDIR=${D} install || die "make install failed."
-	cd ${D}/usr/share
-	dodir /usr/share/doc
-	mv xdrawchem/doc doc/${PF}
-	dosym /usr/share/doc/${PF} /usr/share/xdrawchem/doc
-}
diff --git a/sci-chemistry/xdrawchem/xdrawchem-1.9.8.ebuild b/sci-chemistry/xdrawchem/xdrawchem-1.9.8.ebuild
deleted file mode 100644
index d1698df5620e..000000000000
--- a/sci-chemistry/xdrawchem/xdrawchem-1.9.8.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdrawchem/xdrawchem-1.9.8.ebuild,v 1.2 2006/05/13 22:07:49 spyderous Exp $
-
-inherit qt3
-
-DESCRIPTION="Molecular structure drawing program"
-HOMEPAGE="http://xdrawchem.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~x86 ~sparc ~amd64 ~ppc"
-IUSE=""
-
-DEPEND="$(qt_min_version 3.1)
-	>=sys-devel/gcc-3.2
-	dev-util/pkgconfig
-	=sci-chemistry/openbabel-1.1*"
-
-src_compile() {
-	# make sure we use moc from Qt, not from eg media-sound/moc
-	PATH="${QTDIR}/bin:${PATH}"
-	econf || die "econf failed."
-	emake || die "emake failed."
-}
-
-src_install() {
-	make DESTDIR=${D} install || die "make install failed."
-	cd ${D}/usr/share
-	dodir /usr/share/doc
-	mv xdrawchem/doc doc/${PF}
-	dosym /usr/share/doc/${PF} /usr/share/xdrawchem/doc
-}