diff options
| -rw-r--r-- | sci-biology/ncbi-tools/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/Manifest | 12 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch | 37 |
3 files changed, 51 insertions, 5 deletions
diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog index bf9b0254c9f7..1a953a9f0eab 100644 --- a/sci-biology/ncbi-tools/ChangeLog +++ b/sci-biology/ncbi-tools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/ncbi-tools # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.51 2007/03/09 03:55:37 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.52 2007/03/10 03:34:18 ribosome Exp $ + + 10 Mar 2007; Olivier Fisette <ribosome@gentoo.org> + +files/ncbi-tools-extra_vib.patch: + Added missing patch. Thanks to Walter Meinl <wuno@lsvw.de> for reporting + (bug #170202). *ncbi-tools-20061015-r1 (09 Mar 2007) diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest index fa9589ac2d3f..614755a30962 100644 --- a/sci-biology/ncbi-tools/Manifest +++ b/sci-biology/ncbi-tools/Manifest @@ -6,6 +6,10 @@ AUX ncbi-tools-asn2all.patch 1190 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d MD5 b89cb833887b3e3efda83d074b4b8edb files/ncbi-tools-asn2all.patch 1190 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 files/ncbi-tools-asn2all.patch 1190 SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed files/ncbi-tools-asn2all.patch 1190 +AUX ncbi-tools-extra_vib.patch 1393 RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 SHA1 bb92aeada6786d4573f9ad98e3d50b4a4201ba10 SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1 +MD5 81e003b746faf22d3f1b1df37ffdcf41 files/ncbi-tools-extra_vib.patch 1393 +RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 files/ncbi-tools-extra_vib.patch 1393 +SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1 files/ncbi-tools-extra_vib.patch 1393 AUX ncbi-tools-lop.patch 701 RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 SHA1 be28d340be72b9840342b407d95dc2a558e39de9 SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc MD5 6b62beda180ee6d7d4d4a52507acc3ff files/ncbi-tools-lop.patch 701 RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 files/ncbi-tools-lop.patch 701 @@ -31,10 +35,10 @@ EBUILD ncbi-tools-20061015-r1.ebuild 6495 RMD160 24ab84b6a4bce25a0571c78a5489d57 MD5 b87146ee80dd26bf9d65078fafb9bedb ncbi-tools-20061015-r1.ebuild 6495 RMD160 24ab84b6a4bce25a0571c78a5489d5725e81a01b ncbi-tools-20061015-r1.ebuild 6495 SHA256 135d19e95452b5662a9751f4101ef17a66a618c3031894bb2aa8f761d64a85ad ncbi-tools-20061015-r1.ebuild 6495 -MISC ChangeLog 11759 RMD160 0d1a2d94263bdc3aa8d2eca5a4db99d3c60e9a39 SHA1 0dcf87831c06d52b6515701f6c540abe236f96a5 SHA256 9a9ed5dfb770082e2ef2ef9f0021dd0ff04cb3523d81a8cdb7d2295ff06f8b9a -MD5 f581fe846f0938410e0d99f9a7c86570 ChangeLog 11759 -RMD160 0d1a2d94263bdc3aa8d2eca5a4db99d3c60e9a39 ChangeLog 11759 -SHA256 9a9ed5dfb770082e2ef2ef9f0021dd0ff04cb3523d81a8cdb7d2295ff06f8b9a ChangeLog 11759 +MISC ChangeLog 11942 RMD160 418e623aefff4952525bfaeb183d69b22ae0261f SHA1 6f68491f1f82dbcef8ee40f333570b48da6bbd3f SHA256 1880fbd9ecaf6162d5d4a60914b27ea4113bccaa8c763debbb3893bf2c58bbfd +MD5 a3d9f3278de702fa4b65610f27e57026 ChangeLog 11942 +RMD160 418e623aefff4952525bfaeb183d69b22ae0261f ChangeLog 11942 +SHA256 1880fbd9ecaf6162d5d4a60914b27ea4113bccaa8c763debbb3893bf2c58bbfd ChangeLog 11942 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262 diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch b/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch new file mode 100644 index 000000000000..cb7d1adf9208 --- /dev/null +++ b/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch @@ -0,0 +1,37 @@ +--- ncbi-20061015/make/makedis.csh 2006-09-14 17:37:03.000000000 +0200 ++++ ncbi/make/makedis.csh 2007-03-07 21:00:36.090836460 +0100 +@@ -485,6 +485,34 @@ + + set net_stat = $status + ++if ( $net_stat == 0 ) then ++ # Compile additional tools, usually hidden ++ if ( ! $?EXTRA_VIB ) then ++ set EXTRA_VIB = ( asn2all ) ++ endif ++ ++ if ("$?NCBI_MT_OTHERLIBS" == "1") then ++ set CMD='make $MFLG -f makenet.unx \ ++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ ++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ ++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ ++ THREAD_OBJ=$NCBI_THREAD_OBJ \ ++ THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \ ++ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB $EXTRA_VIB' ++ else ++ set CMD='make $MFLG -f makenet.unx \ ++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ ++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ ++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ ++ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB $EXTRA_VIB' ++ endif ++ eval echo $CMD ++ eval echo $CMD | sh ++ ++ set net_stat = $status ++ ++endif ++ + if ($make_stat != 0 || $demo_stat != 0 || $threaded_demo_stat != 0 || $net_stat != 0) then + echo FAILURE primary make status = $make_stat, demo = $demo_stat, threaded_demo = $threaded_demo_stat, net = $net_stat + cat <<EOF |