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* Move Qt dependencies to the new categoryMarkos Chandras2013-03-026-34/+51
* sci-biology/ncbi-tools: Fix typo in sed construct, #459920; add patch to fix ...Justin Lecher2013-03-024-26/+116
* Stable for x86, wrt bug #458112Agostino Sarubbo2013-03-013-18/+21
* Stable for amd64, wrt bug #458112Agostino Sarubbo2013-03-013-9/+22
* sci-biology/ncbi-tools: Fix all config files, #459720, #459726, #459878Justin Lecher2013-03-013-11/+16
* sci-biology/meme: Rename all binaries to meme-*; should fix all collisions in...Justin Lecher2013-03-014-92/+18
* sci-biology/ncbi-tools: Clean heuristic to fix build env, #459720 and #459726Justin Lecher2013-03-013-5/+164
* sci-biology/bamtools: Update script and correct dep on jsoncppJustin Lecher2013-03-014-22/+13
* Update jsoncpp dependency, bug #452234.Paweł Hajdan2013-02-283-8/+11
* sci-biology/ncbi-tools++: Drop oldJustin Lecher2013-02-284-89/+16
* sci-biology/rebase: Version BumpJustin Lecher2013-02-284-15/+69
* sci-biology/vcftools: Use PKG_CONFIG instead of generic pkg-configJustin Lecher2013-02-275-21/+24
* sci-biology/plink: Use detected pkg-config instead of genericJustin Lecher2013-02-275-24/+30
* sci-biology/vaal: Version BUmpJustin Lecher2013-02-204-24/+73
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-203-54/+9
* Stable for amd64, wrt bug #458106Agostino Sarubbo2013-02-203-11/+23
* sci-biology/ncbi-tools: Drop old; rename fmerge.1 to fmerg-ncbi.1 -> resolves...Justin Lecher2013-02-188-438/+35
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-184-59/+16
* sci-biology/raxml: Drop old; stop building when non sse3 capable CPU is detec...Justin Lecher2013-02-187-155/+32
* sci-biology/beast-mcmc: Version Bump, fixes missing package, #374277Justin Lecher2013-02-184-12/+116
* sci-biology/unafold: Fix test, #358053; respect CFLAGSJustin Lecher2013-02-185-14/+64
* sci-biology/rmblast: Bug fixes: Build against any boost, #356315; build with ...Justin Lecher2013-02-186-27/+940
* sci-biology/phyml: Drop OldJustin Lecher2013-02-184-51/+13
* sci-biology/sibsim4: Drop OldJustin Lecher2013-02-183-45/+9
* Stable for x86, wrt bug #328425Agostino Sarubbo2013-02-173-18/+21
* Stable for amd64, wrt bug #328431Agostino Sarubbo2013-02-173-9/+21
* Stable for amd64, wrt bug #328425Agostino Sarubbo2013-02-173-7/+30
* sci-biology/phylip: Respect LDFLAGS, #337921Justin Lecher2013-02-175-68/+78
* sci-biology/shrimp: Force sse2 support by the cpu, #337401Justin Lecher2013-02-173-8/+15
* sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431Justin Lecher2013-02-174-22/+34
* sci-biology/bfast: Build in source for testsJustin Lecher2013-02-173-8/+13
* sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patchJustin Lecher2013-02-174-14/+33
* sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patchJustin Lecher2013-02-174-28/+22
* sci-biology/bfast: Drop old; move to autotools-utils; install docs in right p...Justin Lecher2013-02-176-90/+32
* sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in right...Justin Lecher2013-02-175-20/+80
* sci-biology/shrimp: Drop old; block collision with emboss, #450426; move to n...Justin Lecher2013-02-176-96/+46
* sci-biology/primer3: Version BumpJustin Lecher2013-02-143-7/+60
* sci-biology/vienna-rna: Version Bump; move to EAPI=5, new python eclasses; au...Justin Lecher2013-02-137-6/+214
* Specify LICENSE more precisely, see LICENSE file, bug 455566.Ulrich Müller2013-02-055-11/+35
* Add ~ppc, wrt bug #452010Agostino Sarubbo2013-02-033-16/+8
* sci-biology/readseq: Drop old; Resolve file collision sci-biology/meme, #455010Justin Lecher2013-02-016-84/+29
* sci-biology/meme: Resolve file collision with app-text and sci-biology/readse...Justin Lecher2013-02-014-10/+102
* sci-biology/augustus: Drop old, fixes multiple QA issues, #454822Justin Lecher2013-01-316-127/+22
* Stable for x86, wrt bug #454842Agostino Sarubbo2013-01-313-5/+8
* Stable for amd64, wrt bug #454842Agostino Sarubbo2013-01-313-27/+19
* sci-biology/vienna-rna: Only call distutils phase functions with USE=python, ...Justin Lecher2013-01-314-14/+25
* sci-biology/meme: Drop old, fixes bug 297070 & bug 454662Justin Lecher2013-01-314-72/+19
* Stable for x86, wrt bug #454698Agostino Sarubbo2013-01-303-5/+8
* Stable for amd64, wrt bug #454698Agostino Sarubbo2013-01-303-16/+8
* sci-biology/meme: Drop old; add examples handlingJustin Lecher2013-01-306-149/+20