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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.13.3.ebuild,v 1.1 2011/10/09 04:01:53 weaver Exp $
EAPI=4
inherit flag-o-matic
DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats"
HOMEPAGE="http://code.google.com/p/bedtools/"
SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""
S="${WORKDIR}/BEDTools-Version-${PV}"
src_prepare() {
filter-ldflags -Wl,--as-needed
sed -i -e '1 a SHELL := /bin/bash -e' \
-e '/export CXXFLAGS/ d' \
-e '/export CXX/ d' \
Makefile || die
}
src_install(){
dobin bin/*
dodoc README* RELEASE_HISTORY
newbin bin/overlap bt_ovelap
}
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