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authorRepository mirror & CI <repomirrorci@gentoo.org>2021-06-01 08:08:39 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2021-06-01 08:08:39 +0000
commitb2372640140d32697e3a9cfa1d23b7547f03d15c (patch)
tree07ff6ef45d4f057b7575c0a03dcdd234d0f5291b /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-b2372640140d32697e3a9cfa1d23b7547f03d15c.tar.gz
gentoo-b2372640140d32697e3a9cfa1d23b7547f03d15c.tar.bz2
gentoo-b2372640140d32697e3a9cfa1d23b7547f03d15c.zip
2021-06-01 08:08:32 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-0.12.412
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-999912
-rw-r--r--metadata/md5-cache/sci-biology/bcftools-1.10.210
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.29.24
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.30.04
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.2.710
-rw-r--r--metadata/md5-cache/sci-biology/biopython-1.7712
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.16.0.112
8 files changed, 38 insertions, 38 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.12.4 b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
index fb7595209af8..f37fd66cbda2 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-0.12.4
+++ b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
@@ -1,16 +1,16 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DEFINED_PHASES=compile configure install prepare test
-DEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
EAPI=7
HOMEPAGE=https://htseq.readthedocs.io/
INHERIT=distutils-r1
-IUSE=python_targets_python3_7 python_targets_python3_8 python_targets_python3_9
+IUSE=python_targets_python3_8 python_targets_python3_9
KEYWORDS=~amd64
LICENSE=GPL-3+
-RDEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
-REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
+RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
SLOT=0
SRC_URI=https://github.com/htseq/htseq/archive/release_0.12.4.tar.gz -> HTSeq-0.12.4.tar.gz
-_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb
+_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb
_md5_=ae9941d3e3234244619fdcb2b46c8e90
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index aa230ba429bb..d9744e1a20cb 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -1,15 +1,15 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
EAPI=7
HOMEPAGE=https://htseq.readthedocs.io/
INHERIT=distutils-r1 git-r3
-IUSE=python_targets_python3_7 python_targets_python3_8 python_targets_python3_9
+IUSE=python_targets_python3_8 python_targets_python3_9
LICENSE=GPL-3+
PROPERTIES=live
-RDEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
-REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
+RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
SLOT=0
-_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb git-r3 b8e8c92aa5fe8df7187e466138eb4e52
+_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb git-r3 b8e8c92aa5fe8df7187e466138eb4e52
_md5_=ae9941d3e3234244619fdcb2b46c8e90
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.10.2 b/metadata/md5-cache/sci-biology/bcftools-1.10.2
index 4e83f41c61ae..c79057b4950d 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.10.2
+++ b/metadata/md5-cache/sci-biology/bcftools-1.10.2
@@ -1,15 +1,15 @@
DEFINED_PHASES=configure prepare setup
-DEPEND=dev-lang/perl python_single_target_python3_7? ( dev-python/matplotlib[python_targets_python3_7(-)] ) python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) =sci-libs/htslib-1.10.2*:= sys-libs/zlib:= python_single_target_python3_7? ( dev-lang/python:3.7 >=dev-lang/python-exec-2:=[python_targets_python3_7] ) python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] )
+DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) =sci-libs/htslib-1.10.2*:= sys-libs/zlib:= python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] )
DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
EAPI=7
HOMEPAGE=http://www.htslib.org
INHERIT=python-single-r1
-IUSE=python_single_target_python3_7 python_single_target_python3_8 python_single_target_python3_9
+IUSE=python_single_target_python3_8 python_single_target_python3_9
KEYWORDS=~amd64 ~x86
LICENSE=MIT
-RDEPEND=dev-lang/perl python_single_target_python3_7? ( dev-python/matplotlib[python_targets_python3_7(-)] ) python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) =sci-libs/htslib-1.10.2*:= sys-libs/zlib:= python_single_target_python3_7? ( dev-lang/python:3.7 >=dev-lang/python-exec-2:=[python_targets_python3_7] ) python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] )
-REQUIRED_USE=^^ ( python_single_target_python3_7 python_single_target_python3_8 python_single_target_python3_9 )
+RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) =sci-libs/htslib-1.10.2*:= sys-libs/zlib:= python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] )
+REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 )
SLOT=0
SRC_URI=https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2
-_eclasses_=toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-single-r1 d25ac9d5d91fe9d44fda6ec192aca11a
+_eclasses_=toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-single-r1 d25ac9d5d91fe9d44fda6ec192aca11a
_md5_=2fd4d2217632ea38f3b2adae16fec9fb
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.29.2 b/metadata/md5-cache/sci-biology/bedtools-2.29.2
index 85caa8fe90e3..ca4ecd240a90 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.29.2
+++ b/metadata/md5-cache/sci-biology/bedtools-2.29.2
@@ -1,4 +1,4 @@
-BDEPEND=|| ( dev-lang/python:3.9 dev-lang/python:3.8 dev-lang/python:3.7 ) test? ( >=sci-biology/samtools-1.10:0 )
+BDEPEND=|| ( dev-lang/python:3.9 dev-lang/python:3.8 ) test? ( >=sci-biology/samtools-1.10:0 )
DEFINED_PHASES=configure install setup
DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.29.2/bedtools-2.29.2.tar.gz
-_eclasses_=toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-any-r1 17241a11501065ff3651350040875aa9
+_eclasses_=toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-any-r1 17241a11501065ff3651350040875aa9
_md5_=f3eef2425b0d021201cd5bb705836375
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0
index 0f4453d59a15..8f00314ad085 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.30.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0
@@ -1,4 +1,4 @@
-BDEPEND=|| ( dev-lang/python:3.9 dev-lang/python:3.8 dev-lang/python:3.7 ) test? ( >=sci-biology/samtools-1.10:0 )
+BDEPEND=|| ( dev-lang/python:3.9 dev-lang/python:3.8 ) test? ( >=sci-biology/samtools-1.10:0 )
DEFINED_PHASES=configure install setup
DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz
-_eclasses_=toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-any-r1 17241a11501065ff3651350040875aa9
+_eclasses_=toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-any-r1 17241a11501065ff3651350040875aa9
_md5_=14bf1e3697276975f4e8b47a297b1bf5
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index c4a28f03ad8e..ca642f792810 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -1,16 +1,16 @@
-BDEPEND=test? ( dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pandas[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/scipy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/nose-1.3.7-r4[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] ) python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+BDEPEND=test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/nose-1.3.7-r4[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Molecular Structures in Pandas DataFrames
EAPI=7
HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas/
INHERIT=distutils-r1
-IUSE=test test python_targets_python3_7 python_targets_python3_8 python_targets_python3_9
+IUSE=test test python_targets_python3_8 python_targets_python3_9
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=BSD
-RDEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pandas[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/scipy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
-REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
+RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb
+_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb
_md5_=6e4b8600d4f3c3ac26b099a9c4577ca0
diff --git a/metadata/md5-cache/sci-biology/biopython-1.77 b/metadata/md5-cache/sci-biology/biopython-1.77
index c00ca6e307ca..2e6997f8574e 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.77
+++ b/metadata/md5-cache/sci-biology/biopython-1.77
@@ -1,16 +1,16 @@
-BDEPEND=sys-devel/flex python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+BDEPEND=sys-devel/flex python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/networkx[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/rdflib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pygraphviz[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pydot[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+DEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DESCRIPTION=Python modules for computational molecular biology
EAPI=7
HOMEPAGE=https://www.biopython.org/ https://pypi.org/project/biopython/
INHERIT=distutils-r1 optfeature
-IUSE=python_targets_python3_7 python_targets_python3_8 python_targets_python3_9
+IUSE=python_targets_python3_8 python_targets_python3_9
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=HPND
-RDEPEND=dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/networkx[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/rdflib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pygraphviz[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pydot[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
-REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
+RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
SLOT=0
SRC_URI=mirror://pypi/b/biopython/biopython-1.77.tar.gz
-_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb optfeature e142388219c7fee6ff016fe1c78a10a5
+_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb optfeature e142388219c7fee6ff016fe1c78a10a5
_md5_=7f5250b5ff62ae5ff155616d0b65204b
diff --git a/metadata/md5-cache/sci-biology/pysam-0.16.0.1 b/metadata/md5-cache/sci-biology/pysam-0.16.0.1
index 5625036b42b9..cab5dcacb70c 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.16.0.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.16.0.1
@@ -1,17 +1,17 @@
-BDEPEND=test? ( =sci-biology/bcftools-1.10* =sci-biology/samtools-1.10* ) test? ( =sci-libs/htslib-1.10*:= >=dev-python/pytest-4.5.0[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] ) python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+BDEPEND=test? ( =sci-biology/bcftools-1.10* =sci-biology/samtools-1.10* ) test? ( =sci-libs/htslib-1.10*:= >=dev-python/pytest-4.5.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DEFINED_PHASES=compile configure install prepare test
-DEPEND==sci-libs/htslib-1.10*:= dev-python/cython[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/setuptools[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+DEPEND==sci-libs/htslib-1.10*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
EAPI=7
HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/
INHERIT=distutils-r1
-IUSE=test python_targets_python3_7 python_targets_python3_8 python_targets_python3_9
+IUSE=test python_targets_python3_8 python_targets_python3_9
KEYWORDS=~amd64 ~x86
LICENSE=MIT
-RDEPEND==sci-libs/htslib-1.10*:= python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
-REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
+RDEPEND==sci-libs/htslib-1.10*:= python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.16.0.1.tar.gz -> pysam-0.16.0.1.tar.gz
-_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 d273d56dc725880edbeb1f6389faf5f1 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb
+_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e multibuild 6b3d5ee849dafe6cdfd7b859c211fb01 python-utils-r1 6e84b7d3d8d0bb1ee12774f4a66909e2 python-r1 26e4ad0a4190b14f70973dc253e86535 distutils-r1 f0ca511df3fddd316b783632b804e8fb
_md5_=24cbd77fb49bf7dfa36311bf5973256d