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| author |   David Seifert <soap@gentoo.org> | 2024-05-24 10:59:45 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2024-05-24 10:59:45 +0200 |
| commit | 1af696627e09436ead88952c730660ff081c60ba (patch) | |
| tree | 2ab259724136d50e3f92b1dee1bb7f0aeb2c68d8 /sci-biology | |
| parent | sci-biology/raxml: drop 7.2.6 (diff) | |
| download | gentoo-1af696627e09436ead88952c730660ff081c60ba.tar.gz gentoo-1af696627e09436ead88952c730660ff081c60ba.tar.bz2 gentoo-1af696627e09436ead88952c730660ff081c60ba.zip | |
sci-biology/bcftools: drop 1.17
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bcftools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.17.ebuild | 42 |
2 files changed, 0 insertions, 43 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 9cbcbdd02db5..3d2a9ade06aa 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,2 +1 @@ -DIST bcftools-1.17.tar.bz2 7538043 BLAKE2B 82f65d53ebea0527ff000329f158ebdb1d603e04841a096cf8ca0434e7a5694ab43da7959ee10e9cb29328bf82301c03200e1203578a74e2e1118856b2641502 SHA512 39ae44a682e626a5261900e9412170a269e460b559d6607db697e6a12b1e512ffb3bdeb3486413e19b8adca26a8ccbb2bd4af24459decb74592c54473d2c6a68 DIST bcftools-1.19.tar.bz2 7906216 BLAKE2B 43e7ac0fc6ffcf837607fb2fbbd58a72106a89b018d1fd4b24db0eb854a9bf0efd0c7762fae84bf7f51226346777be646d134159ea48e3eb3df71799e9353a3f SHA512 a203c65fa58fca8fb5276e73ed8fc23dfd841e9dc05881304a8b91327d60ac3b5fcf5a55a1f1bab5647037f037ff30f2881791052f6e29cf38c646cbc947a746 diff --git a/sci-biology/bcftools/bcftools-1.17.ebuild b/sci-biology/bcftools/bcftools-1.17.ebuild deleted file mode 100644 index 6adee705bb46..000000000000 --- a/sci-biology/bcftools/bcftools-1.17.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{9..11} ) - -inherit python-single-r1 - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - dev-lang/perl - $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]') - =sci-libs/htslib-$(ver_cut 1-2)*:= - sys-libs/zlib - ${PYTHON_DEPS}" -DEPEND="${RDEPEND}" -BDEPEND="${PYTHON_DEPS}" - -src_prepare() { - default - - python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --disable-bcftools-plugins \ - --disable-libgsl \ - --with-htslib=system -} |