proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

5 files changed, 235 insertions, 0 deletions

diff --git a/sci-chemistry/freeon/Manifest b/sci-chemistry/freeon/Manifest
new file mode 100644
index 000000000000..39a7e4aedcc1
--- /dev/null
+++ b/sci-chemistry/freeon/Manifest
@@ -0,0 +1,2 @@
+DIST freeon-1.0.10.tar.bz2 5872019 SHA256 01f0086a53930afb3078a2794baa1fccdacdc4a23082725cb016068d5a10ec38 SHA512 5bae89d6421600792bf986f6fb7504d321d5d51782587237ecba35191e54c1ec6c5ea1fdc50ed2d339551c527e4efcc5421048ccce0404c4b06875cbd0800862 WHIRLPOOL 84fcf7ca4d62e5a2407f2920f9a13fd2a4930f2637d098954b3be81f540e4a10344d17053a1d05046c2743f317a8898886148439d51364ce10dc66a313eadb8b
+DIST freeon-1.0.8.tar.bz2 5957707 SHA256 ae14c1b640e4dcd9f18d2807f2debf9fc005b7451401e3e5d7b9dc76919f381d SHA512 1227f670a73b4ea39beb26e4136ad535e126ad17d66171c31b3bd403a3886eee150cda865806a2d9dad85646ccb086a6be4f645455eab24603cb064fb725efbd WHIRLPOOL b41a3b1e4bb152309a12ac0c4fec07c932809bb465af4b08cb76f6e0bf089c4d91682e1428c47d1adb449d153a1338cd3d540e860ca22774a299e21da44a16c1
diff --git a/sci-chemistry/freeon/files/freeon-1.0.8-blas.patch b/sci-chemistry/freeon/files/freeon-1.0.8-blas.patch
new file mode 100644
index 000000000000..46fca7fa2a52
--- /dev/null
+++ b/sci-chemistry/freeon/files/freeon-1.0.8-blas.patch
@@ -0,0 +1,165 @@
+ FreeON/Makefile.am |  2 +-
+ HiCu/Makefile.am   |  2 +-
+ ONX/Makefile.am    |  1 +
+ OneE/Makefile.am   |  2 +-
+ QCTC/Makefile.am   |  2 +-
+ SCFeqs/Makefile.am |  2 +-
+ configure.ac       | 12 ++++++++----
+ make.inc           |  2 +-
+ tests/Makefile.am  |  8 ++++----
+ tools/Makefile.am  |  2 +-
+ 10 files changed, 20 insertions(+), 15 deletions(-)
+
+diff --git a/FreeON/Makefile.am b/FreeON/Makefile.am
+index 18e0283..12db056 100644
+--- a/FreeON/Makefile.am
++++ b/FreeON/Makefile.am
+@@ -50,7 +50,7 @@ FreeON_DEPENDENCIES = $(LIBRARY_DEPENDENCY_FILES)
+ 
+ SOURCES_DEPCHECK = $(FreeON_SOURCES)
+ 
+-FreeON_LDADD = $(LDADD_MODULES)
++FreeON_LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ AM_CPPFLAGS += \
+   -DFREEON_BASISSETS=\"$(datadir)/$(PACKAGE)/BasisSets\" \
+diff --git a/HiCu/Makefile.am b/HiCu/Makefile.am
+index 1847354..cc4ebef 100644
+--- a/HiCu/Makefile.am
++++ b/HiCu/Makefile.am
+@@ -27,7 +27,7 @@ EXTRA_DIST = \
+   MMA/CubeRules/RuleD.Inc \
+   MMA/CubeRules/RuleE.Inc
+ 
+-LDADD = $(LDADD_MODULES)
++LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ EXTRA_INCLUDES = -I$(top_srcdir)/Modules/MMA/Functionals
+ AM_CPPFLAGS += -DRULE7 -DEXPLICIT_SOURCE
+diff --git a/ONX/Makefile.am b/ONX/Makefile.am
+index 4d25029..b27b149 100644
+--- a/ONX/Makefile.am
++++ b/ONX/Makefile.am
+@@ -61,6 +61,7 @@ EXTRA_INCLUDES = \
+ 
+ LDADD = \
+   $(LDADD_MODULES) \
++  $(LAPACK_LIBS) \
+   $(builddir)/../TwoE/libfreeonTwoE.la
+ 
+ # In case we have ctags installed, make the necessary tags files.
+diff --git a/OneE/Makefile.am b/OneE/Makefile.am
+index 784bede..ea86ae7 100644
+--- a/OneE/Makefile.am
++++ b/OneE/Makefile.am
+@@ -46,7 +46,7 @@ EXTRA_DIST = \
+   MMA/QQuad32.Inc \
+   MMA/QQuad64.Inc
+ 
+-LDADD = $(LDADD_MODULES)
++LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ EXTRA_INCLUDES = -I$(srcdir)/MMA
+ 
+diff --git a/QCTC/Makefile.am b/QCTC/Makefile.am
+index 3ec39f0..53c358c 100644
+--- a/QCTC/Makefile.am
++++ b/QCTC/Makefile.am
+@@ -105,7 +105,7 @@ EXTRA_DIST = \
+   PBCTensor/Majik_Kubic_WS2.Inc
+ 
+ EXTRA_INCLUDES = -I$(top_builddir)/OneE -I$(top_srcdir)/Modules/MMA/LookUpTables_800_6x
+-LDADD = $(LDADD_MODULES) libktrax.la
++LDADD = $(LDADD_MODULES) libktrax.la $(LAPACK_LIBS)
+ 
+ # In case we have ctags installed, make the necessary tags files.
+ .PHONY : tags
+diff --git a/SCFeqs/Makefile.am b/SCFeqs/Makefile.am
+index 2ee640f..709f220 100644
+--- a/SCFeqs/Makefile.am
++++ b/SCFeqs/Makefile.am
+@@ -57,7 +57,7 @@ SOURCES_DEPCHECK = \
+   $(P2Use_SOURCES) \
+   $(DIIS_SOURCES)
+ 
+-LDADD = $(LDADD_MODULES)
++LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ # In case we have ctags installed, make the necessary tags files.
+ .PHONY : tags
+diff --git a/configure.ac b/configure.ac
+index e0c6a77..726c880 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -784,12 +784,16 @@ END PROGRAM test_compiler
+                   you use a version >= 4.2.0])])
+ 
+ # Check for BLAS.
+-AC_SEARCH_LIBS([dgemm], [blas], [],
+-  [AC_MSG_FAILURE([specify the location of dgemm()])])
++PKG_CHECK_MODULES([BLAS],[blas],[],
++  AC_SEARCH_LIBS([dgemm], [blas], [],
++    [AC_MSG_FAILURE([specify the location of dgemm()])])
++  )
+ 
+ # Check for LAPACK.
+-AC_SEARCH_LIBS([dsyev], [lapack], [],
+-  [AC_MSG_FAILURE([specify the library that contains dsyev()])])
++PKG_CHECK_MODULES([LAPACK],[lapack],[],
++  AC_SEARCH_LIBS([dsyev], [lapack], [],
++    [AC_MSG_FAILURE([specify the library that contains dsyev()])])
++  )
+ 
+ AC_ARG_VAR([H5CC], [h5cc compiler wrapper command])
+ 
+diff --git a/make.inc b/make.inc
+index cf35e40..5766ff9 100644
+--- a/make.inc
++++ b/make.inc
+@@ -9,7 +9,7 @@ AM_CPPFLAGS = @AM_CPPFLAGS@
+ # Fix for bug in autoconf-2.59
+ builddir = .
+ 
+-LDADD_MODULES = $(top_builddir)/Modules/libfreeonmodules.la
++LDADD_MODULES = $(top_builddir)/Modules/libfreeonmodules.la $(LAPACK_MODULES)
+ 
+ # On filesystems which are case-insensitive (which really means HFS+ on OS X)
+ # we can not preprocess into a filename that differs by the case only, i.e. .C
+diff --git a/tests/Makefile.am b/tests/Makefile.am
+index 6bd89f2..ae9da60 100644
+--- a/tests/Makefile.am
++++ b/tests/Makefile.am
+@@ -7,16 +7,16 @@ noinst_PROGRAMS = \
+   sendReceive_HGRho
+ 
+ sleeper_SOURCES = sleeper.F90
+-sleeper_LDADD = $(LDADD_MODULES)
++sleeper_LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ lock_SOURCES = lock.F90
+-lock_LDADD = $(LDADD_MODULES)
++lock_LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ sendReceive_DBL_RNK2_SOURCES = sendReceive_DBL_RNK2.F90
+-sendReceive_DBL_RNK2_LDADD = $(LDADD_MODULES)
++sendReceive_DBL_RNK2_LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ sendReceive_HGRho_SOURCES = sendReceive_HGRho.F90
+-sendReceive_HGRho_LDADD = $(LDADD_MODULES)
++sendReceive_HGRho_LDADD = $(LDADD_MODULES) $(LAPACK_LIBS)
+ 
+ if HAVE_MPIRUN
+ MPI_TESTS = locktest
+diff --git a/tools/Makefile.am b/tools/Makefile.am
+index e0baaff..a6b18b2 100644
+--- a/tools/Makefile.am
++++ b/tools/Makefile.am
+@@ -19,7 +19,7 @@ python_PYTHON = \
+ bin_PROGRAMS = printBCSR convertBCSR
+ 
+ printBCSR_SOURCES = printBCSR.F90
+-printBCSR_LDADD = $(top_builddir)/Modules/libfreeonmodules.la
++printBCSR_LDADD = $(top_builddir)/Modules/libfreeonmodules.la $(LAPACK_LIBS)
+ 
+ convertBCSR_SOURCES = \
+   convertBCSR.cc \
diff --git a/sci-chemistry/freeon/freeon-1.0.10.ebuild b/sci-chemistry/freeon/freeon-1.0.10.ebuild
new file mode 100644
index 000000000000..f19ae3f6fb89
--- /dev/null
+++ b/sci-chemistry/freeon/freeon-1.0.10.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=1
+FORTRAN_STANDARD=90
+PYTHON_COMPAT=( python{2_7,3_3,3_4} )
+
+inherit autotools-utils fortran-2 python-any-r1
+
+DESCRIPTION="An experimental suite of programs for linear scaling quantum chemistry"
+HOMEPAGE="http://www.freeon.org"
+SRC_URI="http://download.savannah.gnu.org/releases/${PN}/${PN}-${PV}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	sci-libs/hdf5
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}
+	${PYTHON_DEPS}"
diff --git a/sci-chemistry/freeon/freeon-1.0.8-r1.ebuild b/sci-chemistry/freeon/freeon-1.0.8-r1.ebuild
new file mode 100644
index 000000000000..9a847d58768e
--- /dev/null
+++ b/sci-chemistry/freeon/freeon-1.0.8-r1.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=1
+FORTRAN_STANDARD=90
+PYTHON_COMPAT=( python{2_7,3_3,3_4} )
+
+inherit autotools-utils fortran-2 python-any-r1
+
+DESCRIPTION="An experimental suite of programs for linear scaling quantum chemistry"
+HOMEPAGE="http://www.freeon.org"
+SRC_URI="http://download.savannah.gnu.org/releases/${PN}/${PN}-${PV}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	sci-libs/hdf5
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}
+	${PYTHON_DEPS}"
+
+PATCHES=( "${FILESDIR}"/${P}-blas.patch )
diff --git a/sci-chemistry/freeon/metadata.xml b/sci-chemistry/freeon/metadata.xml
new file mode 100644
index 000000000000..eba82069680b
--- /dev/null
+++ b/sci-chemistry/freeon/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<longdescription lang="en">
+		FreeON is an experimental, open source (GPL) suite of programs for linear scaling quantum chemistry.
+	</longdescription>
+	<herd>sci-chemistry</herd>
+	<maintainer>
+		<email>nicolasbock@gentoo.org</email>
+		<name>Nicolas Bock</name>
+	</maintainer>
+</pkgmetadata>