diff options
| -rw-r--r-- | sci-chemistry/ball/Manifest | 1 | ||||
| -rw-r--r-- | sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild | 100 | ||||
| -rw-r--r-- | sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch | 355 | ||||
| -rw-r--r-- | sci-chemistry/ball/metadata.xml | 26 |
4 files changed, 472 insertions, 10 deletions
diff --git a/sci-chemistry/ball/Manifest b/sci-chemistry/ball/Manifest index f5a46e404732..f8232c238a61 100644 --- a/sci-chemistry/ball/Manifest +++ b/sci-chemistry/ball/Manifest @@ -1 +1,2 @@ DIST BALL-1.4.2.tar.xz 16080664 BLAKE2B 15faa5f1aed0701ab318ac965ece216be0ff653ab1e57b0a1f2c253cf97b1ac89800ab528c9d044da903b154e16d1dfde936bd1475d6b1903acfa867904a55a7 SHA512 c719af4ef2dc1076818d59b72350b704fbffea06bd44737519fb50d88da113ea509333d407f2330aa59bf1c4e6b81adfd3d28e05459f66d7c9707f8d85db7a87 +DIST ball-1.5.0_pre20180419.tar.gz 37577697 BLAKE2B 44db256dad4703115ca381c4bc7f8393657d9d205b78c9ed55328769129dc38a2898d838bea2beb2e1e5e25184944a5724dd808917928f79c41b8216d98a6677 SHA512 a5cf9680468636c6b3de950f058d1bedb9c2d9ef7b5ba1af60e4b79fab3e6bae9cd814ec3238703075ae66c5a637d1ba8281ce7f11ac842133af91c000c983c3 diff --git a/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild b/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild new file mode 100644 index 000000000000..b4d49d1fb14b --- /dev/null +++ b/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild @@ -0,0 +1,100 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) +COMMIT=e80b5e2021a72faa36bf9e35207998d4590f2cf4 +inherit cmake-utils python-single-r1 + +DESCRIPTION="Biochemical Algorithms Library" +HOMEPAGE="https://github.com/BALL-Project/ball" +SRC_URI="https://github.com/BALL-Project/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz" + +SLOT="0" +LICENSE="LGPL-2 fftw? ( GPL-3 ) openbabel? ( GPL-3 )" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cuda doc +fftw +gui lpsolve mpi openbabel +python svm test threads webengine" + +REQUIRED_USE=" + python? ( ${PYTHON_REQUIRED_USE} ) + threads? ( fftw ) + webengine? ( gui ) +" + +RDEPEND=" + dev-cpp/eigen:3 + dev-libs/boost:= + dev-qt/qtcore:5 + dev-qt/qtnetwork:5 + dev-qt/qtxml:5 + media-libs/glew:0= + virtual/opengl + x11-libs/libX11 + cuda? ( dev-util/nvidia-cuda-toolkit ) + fftw? ( sci-libs/fftw:3.0=[threads?] ) + gui? ( + dev-qt/qtgui:5 + dev-qt/qtopengl:5 + dev-qt/qtprintsupport:5 + dev-qt/qttest:5 + dev-qt/qtwidgets:5 + ) + lpsolve? ( sci-mathematics/lpsolve ) + mpi? ( virtual/mpi ) + openbabel? ( sci-chemistry/openbabel:= ) + python? ( ${PYTHON_DEPS} ) + svm? ( sci-libs/libsvm:= ) + webengine? ( + dev-qt/qtwebchannel:5 + dev-qt/qtwebengine:5[widgets] + ) +" +DEPEND="${RDEPEND} + sys-devel/bison + virtual/yacc + doc? ( app-doc/doxygen[dot] ) + gui? ( dev-qt/linguist-tools:5 ) + python? ( dev-python/sip ) +" + +S="${WORKDIR}"/${PN}-${COMMIT} + +PATCHES=( "${FILESDIR}"/${PN}-1.5.0-gnuinstalldirs.patch ) + +RESTRICT="test" + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_configure() { + local mycmakeargs=( + -DUPDATE_TRANSLATIONS=ON + -DCMAKE_DISABLE_FIND_PACKAGE_LATEX=ON + -DCMAKE_INSTALL_DOCDIR=/usr/share/doc/${PF} + -DUSE_CUDA=$(usex cuda) + -DCMAKE_DISABLE_FIND_PACKAGE_Doxygen=$(usex !doc) + -DCMAKE_DISABLE_FIND_PACKAGE_FFTW=$(usex !fftw) + -DUSE_LPSOLVE=$(usex lpsolve) + -DUSE_MPI=$(usex mpi) + -DREQUIRE_MPI=$(usex mpi) + -DCMAKE_DISABLE_FIND_PACKAGE_OpenBabel2=$(usex !openbabel) + -DBALL_PYTHON_SUPPORT=$(usex python) + -DBALL_HAS_VIEW=$(usex gui) + -DUSE_LIBSVM=$(usex svm) + -DUSE_FFTW_THREADS=$(usex threads) + -DUSE_QTWEBENGINE=$(usex webengine) + ) + + if use fftw || use openbabel; then + mycmakeargs+=( -DBALL_LICENSE=GPL ) + fi + + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + use test && cmake-utils_src_make build_tests +} diff --git a/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch b/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch new file mode 100644 index 000000000000..f9fedc58bb6f --- /dev/null +++ b/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch @@ -0,0 +1,355 @@ +From a8cade5ed7090c704aed53871fb664a0fe07af54 Mon Sep 17 00:00:00 2001 +From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com> +Date: Sat, 21 Apr 2018 20:07:09 +0200 +Subject: [PATCH 1/3] Use GNUInstallDirs + +--- + CMakeLists.txt | 30 ++++++++++++++++-------------- + 1 file changed, 16 insertions(+), 14 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index be57fe90c..1a54446fb 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -65,6 +65,8 @@ INCLUDE(BALLCompilerSpecific) + # Determine BALL configuration + INCLUDE(BALLConfiguration) + ++INCLUDE(GNUInstallDirs) ++ + # We do not have a Component-based installer in MacOS + IF(NOT APPLE) + INCLUDE(BALLComponents) +@@ -473,20 +475,20 @@ SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/bin") + + ## These variables are used in all install-targets + IF (NOT APPLE) +- SET(BALL_RUNTIME_INSTALL_DIRECTORY "bin") +- SET(BALL_LIBRARY_INSTALL_DIRECTORY "lib") +- SET(BALL_ARCHIVE_INSTALL_DIRECTORY "lib") +- SET(BALL_HEADER_INSTALL_DIRECTORY ".") +- SET(BALL_DATA_INSTALL_DIRECTORY "share/BALL") +- SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY "share/BALL/doc") +- SET(BALL_TOOLS_INSTALL_DIRECTORY "bin/BALLTools") ++ SET(BALL_RUNTIME_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}) ++ SET(BALL_LIBRARY_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) ++ SET(BALL_ARCHIVE_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) ++ SET(BALL_HEADER_INSTALL_DIRECTORY ${CMAKE_INSTALL_INCLUDEDIR}) ++ SET(BALL_DATA_INSTALL_DIRECTORY ${CMAKE_INSTALL_DATAROOTDIR}/BALL) ++ SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY ${CMAKE_INSTALL_DOCDIR}) ++ SET(BALL_TOOLS_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}/BALLTools) + + IF(WIN32) + SET(BALL_PYTHON_INSTALL_DIRECTORY "bin") + SET(BALL_PLUGIN_INSTALL_DIRECTORY "bin") + ELSE() +- SET(BALL_PYTHON_INSTALL_DIRECTORY "lib") +- SET(BALL_PLUGIN_INSTALL_DIRECTORY "lib") ++ SET(BALL_PYTHON_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) ++ SET(BALL_PLUGIN_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) + ENDIF() + ENDIF() + +@@ -710,21 +712,21 @@ IF(NOT APPLE) + ## care of data files and headers + IF (NOT "${CMAKE_INSTALL_PREFIX}" STREQUAL ".") + ### Install the data directories +- INSTALL(DIRECTORY data DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL}) ++ INSTALL(DIRECTORY data/ DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL}) + + ### Install the includes +- INSTALL(DIRECTORY include DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV}) ++ INSTALL(DIRECTORY include/ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV}) + ENDIF() + + ## The configured files have to be copied in any case + INSTALL(FILES ${PROJECT_BINARY_DIR}/include/BALL/CONFIG/config.h +- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/include/BALL/CONFIG" ++ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/CONFIG" + COMPONENT ${COMPONENT_LIBBALL_DEV} + ) + + INSTALL(FILES + ${PROJECT_BINARY_DIR}/include/BALL/PYTHON/BALLPythonConfig.h +- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/include/BALL/PYTHON" ++ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/PYTHON" + COMPONENT ${COMPONENT_LIBBALL_DEV} + ) + +@@ -866,7 +868,7 @@ EXPORT(PACKAGE BALL) + # Generate CMake package configuration for BALL installation + IF(NOT APPLE) + # Installation path for BALL CMake package configuration files +- SET(BALL_CMAKE_EXPORT_PATH "lib/cmake/BALL" CACHE PATH "Path to the cmake package configuration files") ++ SET(BALL_CMAKE_EXPORT_PATH ${CMAKE_INSTALL_LIBDIR}/cmake/BALL CACHE PATH "Path to the cmake package configuration files") + + LIST(REMOVE_ITEM BALL_INCLUDE_DIRS "${PROJECT_BINARY_DIR}/include") + LIST(REMOVE_ITEM BALL_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/include") +-- +2.17.0 + + +From 17cbef40ad91cf051ca83b1ccf53dd2ccb22fc8d Mon Sep 17 00:00:00 2001 +From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com> +Date: Sat, 21 Apr 2018 21:20:01 +0200 +Subject: [PATCH 2/3] Drop superfluous cmake variables + +--- + CMakeLists.txt | 34 +++++++------------ + cmake/BALLDoc.cmake | 6 ++-- + source/APPLICATIONS/BALLVIEW/CMakeLists.txt | 4 +-- + source/EXTENSIONS/BALLAXY/CMakeLists.txt | 2 +- + source/EXTENSIONS/JUPYTER/CMakeLists.txt | 2 +- + source/EXTENSIONS/PRESENTABALL/CMakeLists.txt | 2 +- + source/PYTHON/EXTENSIONS/CMakeLists.txt | 12 +++---- + 7 files changed, 27 insertions(+), 35 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 1a54446fb..9b9f3513b 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -475,14 +475,6 @@ SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/bin") + + ## These variables are used in all install-targets + IF (NOT APPLE) +- SET(BALL_RUNTIME_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}) +- SET(BALL_LIBRARY_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) +- SET(BALL_ARCHIVE_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) +- SET(BALL_HEADER_INSTALL_DIRECTORY ${CMAKE_INSTALL_INCLUDEDIR}) +- SET(BALL_DATA_INSTALL_DIRECTORY ${CMAKE_INSTALL_DATAROOTDIR}/BALL) +- SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY ${CMAKE_INSTALL_DOCDIR}) +- SET(BALL_TOOLS_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}/BALLTools) +- + IF(WIN32) + SET(BALL_PYTHON_INSTALL_DIRECTORY "bin") + SET(BALL_PLUGIN_INSTALL_DIRECTORY "bin") +@@ -693,18 +685,18 @@ IF(NOT APPLE) + INSTALL(TARGETS BALL + EXPORT BALLExportGroup + COMPONENT "${COMPONENT_LIBBALL}" +- RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" +- LIBRARY DESTINATION "${BALL_LIBRARY_INSTALL_DIRECTORY}" +- ARCHIVE DESTINATION "${BALL_ARCHIVE_INSTALL_DIRECTORY}" ++ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" ++ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}" ++ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}" + ) + + IF(BALL_HAS_VIEW) + INSTALL(TARGETS VIEW + EXPORT BALLExportGroup + COMPONENT "${COMPONENT_LIBVIEW}" +- RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" +- LIBRARY DESTINATION "${BALL_LIBRARY_INSTALL_DIRECTORY}" +- ARCHIVE DESTINATION "${BALL_ARCHIVE_INSTALL_DIRECTORY}" ++ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" ++ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}" ++ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}" + ) + ENDIF() + +@@ -712,21 +704,21 @@ IF(NOT APPLE) + ## care of data files and headers + IF (NOT "${CMAKE_INSTALL_PREFIX}" STREQUAL ".") + ### Install the data directories +- INSTALL(DIRECTORY data/ DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL}) ++ INSTALL(DIRECTORY data/ DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/BALL COMPONENT ${COMPONENT_LIBBALL}) + + ### Install the includes +- INSTALL(DIRECTORY include/ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV}) ++ INSTALL(DIRECTORY include/ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}" COMPONENT ${COMPONENT_LIBBALL_DEV}) + ENDIF() + + ## The configured files have to be copied in any case + INSTALL(FILES ${PROJECT_BINARY_DIR}/include/BALL/CONFIG/config.h +- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/CONFIG" ++ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/BALL/CONFIG" + COMPONENT ${COMPONENT_LIBBALL_DEV} + ) + + INSTALL(FILES + ${PROJECT_BINARY_DIR}/include/BALL/PYTHON/BALLPythonConfig.h +- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/PYTHON" ++ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/BALL/PYTHON" + COMPONENT ${COMPONENT_LIBBALL_DEV} + ) + +@@ -744,14 +736,14 @@ IF(NOT APPLE) + FOREACH(LIB ${BALL_DEP_OPT_DLLS}) + STRING(TOLOWER "${LIB}" LOWER_LIB) + INSTALL(FILES "${LIB}" +- DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" ++ DESTINATION "${CMAKE_INSTALL_BINDIR}" + COMPONENT ${COMPONENT_LIBBALL}) + ENDFOREACH() + + IF(QT_DEPLOY_EXECUTABLE) + INSTALL(CODE +- "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/BALL.dll) +- EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/VIEW.dll)" ++ "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/BALL.dll) ++ EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/VIEW.dll)" + COMPONENT "${COMPONENT_LIBBALL}") + ENDIF() + ENDIF() +diff --git a/cmake/BALLDoc.cmake b/cmake/BALLDoc.cmake +index 061b9c95f..2d7c17466 100644 +--- a/cmake/BALLDoc.cmake ++++ b/cmake/BALLDoc.cmake +@@ -20,7 +20,7 @@ ENDIF() + + IF(NOT APPLE) + INSTALL(DIRECTORY "${PROJECT_SOURCE_DIR}/doc/examples/" +- DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/EXAMPLES" ++ DESTINATION "${CMAKE_INSTALL_DOCDIR}/EXAMPLES" + COMPONENT "${COMPONENT_DOCUMENTATION_EXAMPLES}") + ENDIF() + +@@ -53,7 +53,7 @@ IF (DOXYGEN_FOUND) + + IF(NOT APPLE) + INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/doc/html/" +- DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/BALL" ++ DESTINATION "${CMAKE_INSTALL_DOCDIR}/BALL" + COMPONENT "${COMPONENT_DOCUMENTATION_HTML}" + ) + ENDIF() +@@ -107,7 +107,7 @@ IF (LATEX_COMPILER AND DVIPS_CONVERTER) + + IF(NOT APPLE) + INSTALL(FILES ${PROJECT_BINARY_DIR}/doc/tutorial.pdf +- DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/TUTORIAL" ++ DESTINATION "${CMAKE_INSTALL_DOCDIR}/TUTORIAL" + COMPONENT "${COMPONENT_DOCUMENTATION_PDF}" + OPTIONAL + ) +diff --git a/source/APPLICATIONS/BALLVIEW/CMakeLists.txt b/source/APPLICATIONS/BALLVIEW/CMakeLists.txt +index b4b96c31c..5fd21ee68 100644 +--- a/source/APPLICATIONS/BALLVIEW/CMakeLists.txt ++++ b/source/APPLICATIONS/BALLVIEW/CMakeLists.txt +@@ -59,13 +59,13 @@ IF(APPLE) + ELSE() + INSTALL(TARGETS BALLView + COMPONENT "${COMPONENT_BALLVIEW}" +- RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" ++ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" + BUNDLE DESTINATION "${BALL_BUNDLE_INSTALL_DIRECTORY}" + ) + + IF(WIN32) + IF(QT_DEPLOY_EXECUTABLE) +- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/BALLView.exe)" ++ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/BALLView.exe)" + COMPONENT "${COMPONENT_BALLVIEW}") + ENDIF() + ENDIF() +diff --git a/source/EXTENSIONS/BALLAXY/CMakeLists.txt b/source/EXTENSIONS/BALLAXY/CMakeLists.txt +index 2fdfcbeed..1eed12c37 100644 +--- a/source/EXTENSIONS/BALLAXY/CMakeLists.txt ++++ b/source/EXTENSIONS/BALLAXY/CMakeLists.txt +@@ -66,7 +66,7 @@ IF(NOT APPLE) + + IF(WIN32) + IF(QT_DEPLOY_EXECUTABLE) +- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginBALLaxy.dll)" ++ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginBALLaxy.dll)" + COMPONENT "Unspecified") + ENDIF() + ENDIF() +diff --git a/source/EXTENSIONS/JUPYTER/CMakeLists.txt b/source/EXTENSIONS/JUPYTER/CMakeLists.txt +index bb7e91921..24a459fbf 100644 +--- a/source/EXTENSIONS/JUPYTER/CMakeLists.txt ++++ b/source/EXTENSIONS/JUPYTER/CMakeLists.txt +@@ -78,7 +78,7 @@ IF(NOT APPLE) + + IF(WIN32) + IF(QT_DEPLOY_EXECUTABLE) +- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginJupyter.dll)" ++ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginJupyter.dll)" + COMPONENT "Unspecified") + ENDIF() + ENDIF() +diff --git a/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt b/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt +index 8606f2f26..ad027fd03 100644 +--- a/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt ++++ b/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt +@@ -66,7 +66,7 @@ IF(NOT APPLE) + + IF(WIN32) + IF(QT_DEPLOY_EXECUTABLE) +- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginPresentaBALL.dll)" ++ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginPresentaBALL.dll)" + COMPONENT "Unspecified") + ENDIF() + ENDIF() +diff --git a/source/PYTHON/EXTENSIONS/CMakeLists.txt b/source/PYTHON/EXTENSIONS/CMakeLists.txt +index 590e1de3a..374732519 100644 +--- a/source/PYTHON/EXTENSIONS/CMakeLists.txt ++++ b/source/PYTHON/EXTENSIONS/CMakeLists.txt +@@ -49,15 +49,15 @@ IF(BALL_PYTHON_SUPPORT) + IF(NOT APPLE) + INSTALL(TARGETS BALLCoremodule + COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}" +- RUNTIME DESTINATION ${BALL_RUNTIME_INSTALL_DIRECTORY} +- LIBRARY DESTINATION ${BALL_LIBRARY_INSTALL_DIRECTORY} ++ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} ++ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} + ) + + IF(BALL_HAS_VIEW) + INSTALL(TARGETS VIEWmodule + COMPONENT "${COMPONENT_PYTHON_BINDINGS_VIEW}" +- RUNTIME DESTINATION ${BALL_RUNTIME_INSTALL_DIRECTORY} +- LIBRARY DESTINATION ${BALL_LIBRARY_INSTALL_DIRECTORY} ++ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} ++ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} + ) + ENDIF() + +@@ -69,7 +69,7 @@ IF(BALL_PYTHON_SUPPORT) + IF (WIN32) + # INSTALL(FILES ${PYTHON_EXECUTABLE} + # COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}" +- # DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" ++ # DESTINATION "${CMAKE_INSTALL_BINDIR}" + #) + + +@@ -78,7 +78,7 @@ IF(BALL_PYTHON_SUPPORT) + + INSTALL(DIRECTORY "${PYTHON_SITE_PACKAGES_DIR}" + COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}" +- DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" ++ DESTINATION "${CMAKE_INSTALL_BINDIR}" + ) + ENDIF () + ENDIF() +-- +2.17.0 + + +From 666ca19b00b14752e69c05600725724fb4f6d488 Mon Sep 17 00:00:00 2001 +From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com> +Date: Sat, 21 Apr 2018 22:02:14 +0200 +Subject: [PATCH 3/3] Install html doc into "html" dir + +--- + cmake/BALLDoc.cmake | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/cmake/BALLDoc.cmake b/cmake/BALLDoc.cmake +index 2d7c17466..a070613c8 100644 +--- a/cmake/BALLDoc.cmake ++++ b/cmake/BALLDoc.cmake +@@ -53,7 +53,7 @@ IF (DOXYGEN_FOUND) + + IF(NOT APPLE) + INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/doc/html/" +- DESTINATION "${CMAKE_INSTALL_DOCDIR}/BALL" ++ DESTINATION "${CMAKE_INSTALL_DOCDIR}/html" + COMPONENT "${COMPONENT_DOCUMENTATION_HTML}" + ) + ENDIF() +-- +2.17.0 + diff --git a/sci-chemistry/ball/metadata.xml b/sci-chemistry/ball/metadata.xml index 72d683b18460..37a132c1a1cf 100644 --- a/sci-chemistry/ball/metadata.xml +++ b/sci-chemistry/ball/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-chemistry@gentoo.org</email> + <name>Gentoo Chemistry Project</name> + </maintainer> + <longdescription> Rapid Software Prototyping can significantly reduce development times in the field of Computational Molecular Biology and Molecular Modeling. BALL (Biochemical Algorithms Library) is an application framework in C++ that @@ -23,9 +23,15 @@ structures and algorithms. Based on BALL we have developed a stand-alone tool for molecular visualization, BALLView . BALLView makes the broad functionality available through an integrated user-friendly GUI. -</longdescription> - <use> - <flag name="sql">Include SQL database support</flag> - <flag name="cuda">Include cuda support</flag> - </use> + </longdescription> + <use> + <flag name="cuda">Include cuda support</flag> + <flag name="fftw">Build with <pkg>sci-libs/fftw</pkg> (switching BALL to GPL3)</flag> + <flag name="gui">Build VIEW library required for visualization and graphical user interfaces</flag> + <flag name="lpsolve">Enable support for the Mixed Integer Linear Programming solver</flag> + <flag name="sql">Include SQL database support</flag> + <flag name="openbabel">Enable support for <pkg>sci-chemistry/openbabel</pkg> (switching BALL to GPL3)</flag> + <flag name="svm">Enable support for the Support Vector Machine module</flag> + <flag name="webengine">Enable QtWebEngine support with Qt5 (requires gui)</flag> + </use> </pkgmetadata> |