diff options
Diffstat (limited to 'sci-biology/stride')
| -rw-r--r-- | sci-biology/stride/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/stride/files/stride-LDFLAGS.patch | 11 | ||||
| -rw-r--r-- | sci-biology/stride/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/stride/stride-20011129-r1.ebuild | 38 |
4 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest new file mode 100644 index 000000000000..cd6e1754804f --- /dev/null +++ b/sci-biology/stride/Manifest @@ -0,0 +1,2 @@ +DIST stride-20060723-update.patch.bz2 5621 SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1 WHIRLPOOL fbe19cd7da96a845a001f5fcfb6c0aed7b9c4c152b48ef9ab9df63b1d72c9a97e545c9a6e12c5c58823210dd48050392b0a9c0758c1d57c3677ac5092de863f9 +DIST stride.tar.gz 56441 SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9 SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b WHIRLPOOL 843c789eda18da69a670a134f8a19103381ac86d611a3e1f0b47e17c3d171a195b8064d131ec3f81a561a65d8536d5f8a8c3a490776646b50ecb6aee36c46536 diff --git a/sci-biology/stride/files/stride-LDFLAGS.patch b/sci-biology/stride/files/stride-LDFLAGS.patch new file mode 100644 index 000000000000..1761b12129bd --- /dev/null +++ b/sci-biology/stride/files/stride-LDFLAGS.patch @@ -0,0 +1,11 @@ +--- Makefile 2009-10-27 21:18:45.000000000 +0100 ++++ Makefile.new 2009-10-27 21:19:00.000000000 +0100 +@@ -12,7 +12,7 @@ + + + stride : $(OBJECT) +- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride ++ $(CC) $(LDFLAGS) $(OBJECT) $(FLAGS) $(BINDIR)/stride + + $(OBJECT) : stride.h protot.h + diff --git a/sci-biology/stride/metadata.xml b/sci-biology/stride/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/stride/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild new file mode 100644 index 000000000000..0848427631a0 --- /dev/null +++ b/sci-biology/stride/stride-20011129-r1.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="Protein secondary structure assignment from atomic coordinates" +HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/" +SRC_URI=" + ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz + http://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2" + +SLOT="0" +LICENSE="STRIDE" +KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x86-macos" +IUSE="" + +S="${WORKDIR}" + +RESTRICT="mirror bindist" + +src_prepare() { + # this patch updates the source to the most recent + # version which was kindly provided by the author + epatch \ + "${DISTDIR}/${PN}-20060723-update.patch.bz2" \ + "${FILESDIR}"/${PN}-LDFLAGS.patch + + # fix makefile + sed -e "/^CC/s|gcc -g|$(tc-getCC) ${CFLAGS}|" -i Makefile || \ + die "Failed to fix Makefile" +} + +src_install() { + dobin ${PN} +} |