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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit autotools flag-o-matic python-single-r1 qmake-utils
DESCRIPTION="A Modular, Open-Source whole genome assembler"
HOMEPAGE="http://amos.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="qt4"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
DEPEND="qt4? ( dev-qt/qtcore:4 )"
RDEPEND="${DEPEND}
${PYTHON_DEPS}
dev-perl/DBI
dev-perl/Statistics-Descriptive
sci-biology/mummer"
PATCHES=(
"${FILESDIR}"/${P}-gcc-4.7.patch
"${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
"${WORKDIR}"/${P}-fix-c++14.patch
"${FILESDIR}"/${P}-qa-Wformat.patch
"${FILESDIR}"/${P}-fix-build-system.patch
)
src_prepare() {
default
eautoreconf
# prevent GCC 6 log pollution due
# to hash_map deprecation in C++11
append-cxxflags -Wno-cpp
}
src_configure() {
econf \
--with-qmake-qt4=$(usex qt4 $(qt4_get_bindir)/qmake no)
}
src_install() {
default
python_fix_shebang "${ED%/}"/usr/bin/goBambus2
}
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