blob: 135bec2695ce07ee4e8566827e9cd5d395a6ad4e (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=4
inherit eutils toolchain-funcs
DESCRIPTION="Tools for DNA/RNA sequence database handling and phylogenetic analysis"
HOMEPAGE="http://www.arb-home.de/"
SRC_URI="
http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz
https://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.xz"
SLOT="0"
LICENSE="arb"
IUSE="+opengl"
KEYWORDS="~amd64 ~x86"
CDEPEND="app-text/sablotron
media-libs/libpng
media-libs/tiff
www-client/lynx
x11-libs/libXaw
x11-libs/libXpm
x11-libs/motif:0
opengl? (
media-libs/glew
media-libs/freeglut
|| (
media-libs/mesa[motif]
( media-libs/mesa x11-libs/libGLw ) ) )"
DEPEND="${CDEPEND}
sys-process/time"
RDEPEND="${CDEPEND}
sci-visualization/gnuplot"
# Recommended: libmotif3 gv xfig xterm treetool java
src_unpack() {
unpack ${A}
mv arbsrc* ${P}
}
src_prepare() {
epatch \
"${WORKDIR}"/${P}-linker.patch \
"${FILESDIR}"/5.1-libs.patch \
"${FILESDIR}"/5.1-bfr-overflow.patch \
"${FILESDIR}"/5.2-libpng15.patch \
"${FILESDIR}"/${PN}-5.2-gcc-47.patch
sed \
-e 's/all: checks/all:/' \
-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
-e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \
-i "${S}/Makefile" || die
cp config.makefile.template config.makefile
sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die
use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile
use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile
emake ARBHOME="${S}" links
}
src_compile() {
emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile
use amd64 && mv arb.tgz arb.64.gentoo.tgz
use x86 && mv arb.tgz arb.32.gentoo.tgz
ln -s arb.*.tgz arb.tgz || die
}
src_install() {
ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
cat <<- EOF > "${S}/99${PN}"
ARBHOME=/opt/arb
PATH=/opt/arb/bin
LD_LIBRARY_PATH=/opt/arb/lib
EOF
doenvd "${S}/99${PN}"
}
|
GitWeb