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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
MY_PV="${PV/_beta/b}"
DESCRIPTION="Sequence analysis using profile hidden Markov models"
HOMEPAGE="http://hmmer.org/"
SRC_URI="http://eddylab.org/software/${PN}3/${MY_PV}/hmmer-${MY_PV}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE="altivec cpu_flags_x86_sse gsl mpi test +threads"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
RDEPEND="
mpi? ( virtual/mpi )
gsl? ( sci-libs/gsl:= )"
DEPEND="${RDEPEND}
test? ( dev-lang/perl )"
S="${WORKDIR}/${PN}-${MY_PV}"
PATCHES=(
"${FILESDIR}/${PN}-3.1_beta2-fix-perl-shebangs.patch"
"${FILESDIR}/${PN}-3.1_beta2-fix-header-install-path.patch"
)
src_configure() {
# make build verbose, bug 429308
export V=1
econf \
--disable-pic \
$(use_enable altivec vmx) \
$(use_enable cpu_flags_x86_sse sse) \
$(use_enable mpi) \
$(use_enable threads) \
$(use_with gsl)
}
src_install() {
default
dodoc Userguide.pdf
insinto /usr/share/${PN}
doins -r tutorial
}
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