diff options
| author |   Donnie Berkholz <dberkholz@gentoo.org> | 2009-07-10 21:06:12 -0700 |
|---|---|---|
| committer | Donnie Berkholz <dberkholz@gentoo.org> | 2009-07-10 21:06:12 -0700 |
| commit | 037c9afc14adefa950c22ffb58b3ae24e53002af (patch) | |
| tree | ce36c4a8172f0bbc9789d3d3675be0980efc7fe5 /sci-biology | |
| parent | Add TMalign, commonly used to compare homology models to the real structures. (diff) | |
| download | dberkholz-037c9afc14adefa950c22ffb58b3ae24e53002af.tar.gz dberkholz-037c9afc14adefa950c22ffb58b3ae24e53002af.tar.bz2 dberkholz-037c9afc14adefa950c22ffb58b3ae24e53002af.zip | |
biskit: bump to 2.3.1
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biskit/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/biskit/biskit-2.3.1.ebuild (renamed from sci-biology/biskit/biskit-2.1.0_beta.ebuild) | 42 |
2 files changed, 14 insertions, 32 deletions
diff --git a/sci-biology/biskit/Manifest b/sci-biology/biskit/Manifest index 813e131..9d71c88 100644 --- a/sci-biology/biskit/Manifest +++ b/sci-biology/biskit/Manifest @@ -1,4 +1,4 @@ AUX 2.1.0_beta-fix-projectroot.patch 539 RMD160 95298e7235ecd4e04c5262f7a700db1d21249e1b SHA1 1b49b00ee4a349012f2adf43b379c0782d7546a8 SHA256 e8c6b93d6adf9b637037b00e8df6de0466483775db9e7cb6782fa746464b8157 -DIST biskit-2.1.0beta.tar.gz 6494771 RMD160 7cce1a79dbc13d4a6910be1b58267d101e0bc166 SHA1 ba399a8a7db029122366a4a6ca404f92e97a7af3 SHA256 936eba6df19a92cf80146a7ae88684d056a30aeeab89a7011fe57f429d5f5d98 -EBUILD biskit-2.1.0_beta.ebuild 1430 RMD160 17560421b04212e304b14e0b5ac484f01a280f93 SHA1 75dd2eaeb761eb2f4db7656e707804280eae2897 SHA256 1c7793939cff1bb4124a6e1f69a9fa567e817d0ec1ed967a3acd85d0eb7f7e92 +DIST biskit-2.3.1.tar.gz 14165396 RMD160 d519e7d37622ad4b01de17d7e57054468dfdd859 SHA1 7c2a2ae364e2efd100f4e865a090e25960324cf8 SHA256 073e6aa9d03bf3258da439d4e5c7f73c34e46e1287058fee398067bf5d9e3115 +EBUILD biskit-2.3.1.ebuild 1065 RMD160 ca64bb98fc27770da953f10ece98ef90314eb783 SHA1 b5d8e313bfd13fa113b8afa7cae87aeb3e36c95b SHA256 c36f9d111dca668b46c9d013d14c7c81467a43050130729b55241b673ef243ac EBUILD biskit-9999.ebuild 1569 RMD160 340b930c927de15f53917e93bd92be837f7a9aa5 SHA1 9ce96a7d6a5d6e86aec853eeca80df6a91b7dd1f SHA256 1c1160baa45eb19f80b9dd991d5e290200033adfe524d2e0aaa34adbdbb5e91a diff --git a/sci-biology/biskit/biskit-2.1.0_beta.ebuild b/sci-biology/biskit/biskit-2.3.1.ebuild index 59bdb31..e877aaa 100644 --- a/sci-biology/biskit/biskit-2.1.0_beta.ebuild +++ b/sci-biology/biskit/biskit-2.3.1.ebuild @@ -2,12 +2,12 @@ # Distributed under the terms of the GNU General Public License v2 # $Header: $ -inherit eutils python portability +inherit distutils MY_P=${P/_/} -DESCRIPTION="This is a sample skeleton ebuild file" -HOMEPAGE="" +DESCRIPTION="A Python platform for structural bioinformatics" +HOMEPAGE="http://biskit.pasteur.fr/" SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz" LICENSE="GPL-2" SLOT="0" @@ -21,7 +21,10 @@ RDEPEND="dev-python/numpy RDEPEND="${RDEPEND} media-libs/plotutils sci-visualization/gnuplot - dev-python/python-biggles" + >=dev-python/python-biggles-1.6.5" +# ROC areas +RDEPEND="${RDEPEND} + sci-libs/scipy" # Homology modeling RDEPEND="${RDEPEND} sci-biology/biopython" @@ -33,33 +36,12 @@ RDEPEND="${RDEPEND} sci-biology/ncbi-tools sci-biology/hmmer sci-chemistry/pymol - sci-chemistry/dssp" + sci-chemistry/dssp + sci-biology/foldx-bin + sci-chemistry/icm-browser" # Biskit/Mod (homology modeling) RDEPEND="${RDEPEND} sci-biology/t-coffee - sci-chemistry/modeller" + sci-chemistry/modeller + sci-biology/TMalign" DEPEND="${RDEPEND}" -S=${WORKDIR}/${PN} - -src_unpack() { - unpack ${A} - cd "${S}" - - # Look for files in the right place - epatch "${FILESDIR}/${PV}-fix-projectroot.patch" -} - -src_install() { - python_version - local py_root="/usr/$(get_libdir)/python${PYVER}/site-packages/" - dodir ${py_root} || die - treecopy Biskit "${D}${py_root}" || die - - local biskit_root="/usr/share/biskit" - dodir ${biskit_root} || die - treecopy external "${D}${biskit_root}" || die - treecopy scripts "${D}${biskit_root}" || die - - dodoc README.txt docs/* || die - -} |