| Commit message (Expand) | Author | Age | Files | Lines |
* | imagej: add 1.44n. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2011-03-03 | 2 | -0/+118 |
* | jalview: Delete from overlay. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2010-09-17 | 1 | -39/+0 |
* | probalign: fix for gcc 4.4 | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2010-08-17 | 2 | -13/+27 |
* | cytoscape: bump java-overlay version to 2.7, fix swingx dep. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2010-06-04 | 1 | -0/+144 |
* | biopython: add a 1.54 beta ebuild. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2010-05-01 | 8 | -142/+92 |
* | Add ebuild for CE, a protein structural alignment program. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-24 | 2 | -0/+49 |
* | biskit: a few fixups | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-10 | 2 | -2/+3 |
* | Add surfaceracer, for calculating solvent-accessible surface, etc. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-10 | 2 | -0/+23 |
* | biskit: bump to 2.3.1 | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-10 | 2 | -32/+14 |
* | Add TMalign, commonly used to compare homology models to the real structures. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-10 | 2 | -0/+27 |
* | foldx-bin: update for upstream packaging changes. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-10 | 2 | -4/+4 |
* | Add biopython bumped to 1.51_beta. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2009-07-01 | 8 | -0/+357 |
* | jalview: nice gui for bioinformatics. ebuild still WIP. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-12-03 | 1 | -0/+39 |
* | biskit-9999: install tests. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-29 | 2 | -1/+2 |
* | readseq: merged to gentoo-x86. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-29 | 2 | -43/+0 |
* | biskit: add live-subversion ebuild. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-29 | 2 | -0/+68 |
* | readseq: use my dev.g.o site for mirror. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-25 | 2 | -2/+6 |
* | readseq: bump to java version, 20080420. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-25 | 2 | -0/+39 |
* | sap: Structure Alignment Program. Required for some t-coffee operations. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-15 | 2 | -0/+33 |
* | probalign: use TMPDIR variable for temporary files. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-14 | 3 | -1/+52 |
* | Add foldx-bin, required for biskit. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-14 | 2 | -0/+41 |
* | Add initial ebuild for biskit, a structural bioinformatics framework. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-14 | 3 | -0/+86 |
* | probalign: refinements suggested by betelgeuse. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-08 | 2 | -4/+2 |
* | Add new alignment package, probalign. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-04-08 | 4 | -0/+96 |
* | Merge mammoth to gentoo-x86 | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-01-08 | 6 | -101/+0 |
* | Add mammoth and mammoth-mult structural superimposition tools. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2008-01-02 | 10 | -0/+174 |
* | poa: merged to gentoo-x86 | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2006-10-20 | 13 | -241/+0 |
* | poa: final QA checks for main tree | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2006-10-20 | 2 | -27/+24 |
* | paml, mafft: merged to gentoo-x86 | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2006-10-20 | 9 | -96/+0 |
* | paml: fix digest, change exeinto/doexe to dobin. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2006-10-20 | 3 | -12/+25 |
* | mafft: bump to 5.861. lots of fixes, --auto flag, handles bigger lengths. | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2006-10-20 | 2 | -0/+32 |
* | mafft: drop old version | ![](//www.gravatar.com/avatar/4bd89909a88b229552b227135b672b2e?s=13&d=retro) Donnie Berkholz | 2006-10-20 | 3 | -38/+8 |
* | Remove things in sync with gentoo-x86. | ![](//www.gravatar.com/avatar/e8a86c1756cb3c68d7515213c521fe28?s=13&d=retro) Donnie Berkholz | 2006-04-24 | 41 | -933/+0 |
* | Initial commit of portage overlay. | ![](//www.gravatar.com/avatar/55f131e89d7a9aa0e4391389b8042466?s=13&d=retro) Donnie Berkholz | 2006-04-17 | 63 | -0/+1258 |